Ankyrin Repeat

Blosum Log2 No Clustering

  A C D E F G H I K L M N P Q R S T V W Y
A 4 1 -3 -2 -1 -4 -3 0 -2 -3 -2 -3 2 -2 -2 0 -2 1 -2 -1
C 1 3 -2 -2 0 -2 -1 2 -1 -1 0 -1 -1 -1 -1 0 -1 2 0 0
D -3 -2 4 2 -1 0 0 -4 1 -4 -2 3 -2 1 0 1 0 -4 -1 -1
E -2 -2 2 3 0 0 -1 -2 2 -2 -1 1 -2 2 2 1 -1 -2 1 0
F -1 0 -1 0 2 -3 1 1 0 1 1 0 -3 0 1 0 -1 0 2 2
G -4 -2 0 0 -3 6 -2 -6 0 -6 -3 1 -3 -1 0 -1 -4 -5 -2 -2
H -3 -1 0 -1 1 -2 5 -1 0 -3 4 1 -5 1 0 0 -2 -3 1 1
I 0 2 -4 -2 1 -6 -1 3 -2 1 1 -4 0 -1 -2 -1 -1 2 1 0
K -2 -1 1 2 0 0 0 -2 3 -3 -1 1 -2 2 2 1 -1 -2 0 1
L -3 -1 -4 -2 1 -6 -3 1 -3 4 0 -4 -2 -2 -2 -3 -3 0 0 0
M -2 0 -2 -1 1 -3 4 1 -1 0 4 -2 -3 0 -1 -1 -1 0 1 1
N -3 -1 3 1 0 1 1 -4 1 -4 -2 3 -3 1 1 1 0 -4 0 0
P 2 -1 -2 -2 -3 -3 -5 0 -2 -2 -3 -3 7 -2 -2 -1 -2 0 -4 -3
Q -2 -1 1 2 0 -1 1 -1 2 -2 0 1 -2 2 2 1 -1 -2 1 1
R -2 -1 0 2 1 0 0 -2 2 -2 -1 1 -2 2 2 1 -1 -2 2 1
S 0 0 1 1 0 -1 0 -1 1 -3 -1 1 -1 1 1 1 2 -1 0 0
T -2 -1 0 -1 -1 -4 -2 -1 -1 -3 -1 0 -2 -1 -1 2 6 -1 -2 -1
V 1 2 -4 -2 0 -5 -3 2 -2 0 0 -4 0 -2 -2 -1 -1 4 -1 -1
W -2 0 -1 1 2 -2 1 1 0 0 1 0 -4 1 2 0 -2 -1 5 3
Y -1 0 -1 0 2 -2 1 0 1 0 1 0 -3 1 1 0 -1 -1 3 2

Blosum LN No Clustering

  A C D E F G H I K L M N P Q R S T V W Y
A 2 1 -2 -1 -1 -2 -2 0 -1 -2 -1 -2 2 -1 -1 0 -1 0 -2 0
C 1 2 -1 -1 0 -2 -1 1 -1 -1 0 -1 -1 -1 0 0 0 1 0 0
D -2 -1 3 1 -1 0 0 -2 0 -3 -1 2 -1 1 0 1 0 -3 0 0
E -1 -1 1 2 0 0 -1 -1 1 -2 -1 1 -1 1 1 1 -1 -2 0 0
F -1 0 -1 0 1 -2 1 0 0 1 1 0 -2 0 0 0 -1 0 2 1
G -2 -2 0 0 -2 4 -2 -4 0 -4 -2 1 -2 0 0 -1 -3 -4 -2 -2
H -2 -1 0 -1 1 -2 3 -1 0 -2 3 1 -3 1 0 0 -2 -2 1 1
I 0 1 -2 -1 0 -4 -1 2 -1 1 1 -3 0 -1 -1 -1 -1 2 0 0
K -1 -1 0 1 0 0 0 -1 2 -2 -1 0 -1 1 2 1 -1 -1 0 0
L -2 -1 -3 -2 1 -4 -2 1 -2 3 0 -3 -2 -2 -2 -2 -2 0 0 0
M -1 0 -1 -1 1 -2 3 1 -1 0 3 -1 -2 0 0 -1 -1 0 1 1
N -2 -1 2 1 0 1 1 -3 0 -3 -1 2 -2 0 1 1 0 -3 0 0
P 2 -1 -1 -1 -2 -2 -3 0 -1 -2 -2 -2 5 -1 -1 -1 -1 0 -3 -2
Q -1 -1 1 1 0 0 1 -1 1 -2 0 0 -1 2 1 1 -1 -1 1 0
R -1 0 0 1 0 0 0 -1 2 -2 0 1 -1 1 2 1 -1 -1 1 1
S 0 0 1 1 0 -1 0 -1 1 -2 -1 1 -1 1 1 1 1 -1 0 0
T -1 0 0 -1 -1 -3 -2 -1 -1 -2 -1 0 -1 -1 -1 1 4 -1 -1 -1
V 0 1 -3 -2 0 -4 -2 2 -1 0 0 -3 0 -1 -1 -1 -1 2 -1 -1
W -2 0 0 0 2 -2 1 0 0 0 1 0 -3 1 1 0 -1 -1 3 2
Y 0 0 0 0 1 -2 1 0 0 0 1 0 -2 0 1 0 -1 -1 2 2

Blosum Log10 No Clustering

  A C D E F G H I K L M N P Q R S T V W Y
A 1 0 -1 -1 0 -1 -1 0 -1 -1 -1 -1 1 -1 -1 0 -1 0 -1 0
C 0 1 -1 0 0 -1 0 0 0 0 0 0 0 0 0 0 0 1 0 0
D -1 -1 1 1 0 0 0 -1 0 -1 0 1 -1 0 0 0 0 -1 0 0
E -1 0 1 1 0 0 0 -1 1 -1 0 0 0 1 0 0 0 -1 0 0
F 0 0 0 0 1 -1 0 0 0 0 0 0 -1 0 0 0 0 0 1 0
G -1 -1 0 0 -1 2 -1 -2 0 -2 -1 0 -1 0 0 0 -1 -2 -1 -1
H -1 0 0 0 0 -1 2 0 0 -1 1 0 -1 0 0 0 -1 -1 0 0
I 0 0 -1 -1 0 -2 0 1 -1 0 0 -1 0 0 0 0 0 1 0 0
K -1 0 0 1 0 0 0 -1 1 -1 0 0 -1 1 1 0 0 -1 0 0
L -1 0 -1 -1 0 -2 -1 0 -1 1 0 -1 -1 -1 -1 -1 -1 0 0 0
M -1 0 0 0 0 -1 1 0 0 0 1 -1 -1 0 0 0 0 0 0 0
N -1 0 1 0 0 0 0 -1 0 -1 -1 1 -1 0 0 0 0 -1 0 0
P 1 0 -1 0 -1 -1 -1 0 -1 -1 -1 -1 2 -1 -1 0 -1 0 -1 -1
Q -1 0 0 1 0 0 0 0 1 -1 0 0 -1 1 1 0 0 -1 0 0
R -1 0 0 0 0 0 0 0 1 -1 0 0 -1 1 1 0 0 -1 0 0
S 0 0 0 0 0 0 0 0 0 -1 0 0 0 0 0 0 1 0 0 0
T -1 0 0 0 0 -1 -1 0 0 -1 0 0 -1 0 0 1 2 0 0 0
V 0 1 -1 -1 0 -2 -1 1 -1 0 0 -1 0 -1 -1 0 0 1 0 0
W -1 0 0 0 1 -1 0 0 0 0 0 0 -1 0 0 0 0 0 1 1
Y 0 0 0 0 0 -1 0 0 0 0 0 0 -1 0 0 0 0 0 1 1

Distance Log2

  A C D E F G H I K L M N P Q R S T V W Y
A 3 6 7 6 8 7 7 5 6 5 7 7 5 7 6 6 6 5 9 7
C 6 9 9 9 9 9 9 7 8 7 9 8 9 9 8 8 8 6 11 9
D 7 9 6 6 9 6 7 8 6 7 8 5 8 7 7 6 7 8 10 8
E 6 9 6 6 8 6 7 8 6 6 8 6 8 6 6 6 7 7 9 8
F 8 9 9 8 10 9 8 8 8 6 9 8 10 9 8 8 9 8 10 8
G 7 9 6 6 9 4 7 9 6 7 9 5 8 7 7 7 8 8 10 8
H 7 9 7 7 8 7 5 7 7 7 6 6 10 7 7 7 8 8 9 7
I 5 7 8 8 8 9 7 6 8 4 7 8 8 8 8 7 7 5 9 8
K 6 8 6 6 8 6 7 8 7 7 8 6 9 7 6 7 7 7 10 8
L 5 7 7 6 6 7 7 4 7 3 6 7 7 7 6 7 6 5 8 6
M 7 9 8 8 9 9 6 7 8 6 8 8 10 9 8 8 8 7 10 8
N 7 8 5 6 8 5 6 8 6 7 8 6 9 7 6 6 6 8 9 7
P 5 9 8 8 10 8 10 8 9 7 10 9 6 9 9 8 8 7 13 10
Q 7 9 7 6 9 7 7 8 7 7 9 7 9 8 7 7 8 8 10 8
R 6 8 7 6 8 7 7 8 6 6 8 6 9 7 7 7 7 7 9 7
S 6 8 6 6 8 7 7 7 7 7 8 6 8 7 7 7 6 7 10 8
T 6 8 7 7 9 8 8 7 7 6 8 6 8 8 7 6 5 7 10 8
V 5 6 8 7 8 8 8 5 7 5 7 8 7 8 7 7 7 5 10 8
W 9 11 10 9 10 10 9 9 10 8 10 9 13 10 9 10 10 10 11 9
Y 7 9 8 8 8 8 7 8 8 6 8 7 10 8 7 8 8 8 9 8

Distance LN

  A C D E F G H I K L M N P Q R S T V W Y
A 2 4 4 4 5 4 4 4 4 3 5 4 3 4 4 4 4 3 6 4
C 4 6 6 6 6 6 6 5 6 4 6 5 6 6 5 5 5 4 7 6
D 4 6 4 4 6 4 4 5 4 5 5 3 6 4 4 4 4 5 6 5
E 4 6 4 4 5 4 5 5 4 4 5 4 6 4 4 4 5 5 6 5
F 5 6 6 5 6 6 5 5 6 4 6 5 7 6 5 6 6 5 7 5
G 4 6 4 4 6 2 5 6 4 5 6 3 6 5 4 4 5 6 7 5
H 4 6 4 5 5 5 3 5 5 4 4 4 7 5 4 4 5 5 6 5
I 4 5 5 5 5 6 5 4 5 3 5 6 5 5 5 5 5 3 6 5
K 4 6 4 4 6 4 5 5 4 4 6 4 6 4 4 4 5 5 6 5
L 3 4 5 4 4 5 4 3 4 2 4 5 5 5 4 4 4 3 5 4
M 5 6 5 5 6 6 4 5 6 4 5 6 7 6 5 5 5 5 7 5
N 4 5 3 4 5 3 4 6 4 5 6 4 6 4 4 4 4 5 6 5
P 3 6 6 6 7 6 7 5 6 5 7 6 4 6 6 5 6 5 9 7
Q 4 6 4 4 6 5 5 5 4 5 6 4 6 5 4 5 5 5 7 5
R 4 5 4 4 5 4 4 5 4 4 5 4 6 4 5 4 5 5 6 5
S 4 5 4 4 6 4 4 5 4 4 5 4 5 5 4 5 4 5 7 5
T 4 5 4 5 6 5 5 5 5 4 5 4 6 5 5 4 3 4 7 5
V 3 4 5 5 5 6 5 3 5 3 5 5 5 5 5 5 4 3 6 5
W 6 7 6 6 7 7 6 6 6 5 7 6 9 7 6 7 7 6 7 6
Y 4 6 5 5 5 5 5 5 5 4 5 5 7 5 5 5 5 5 6 6

Distance Log10

  A C D E F G H I K L M N P Q R S T V W Y
A 0 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1
C 1 2 2 2 2 2 2 1 2 1 2 2 2 2 2 2 2 1 3 2
D 1 2 1 1 2 1 1 2 1 1 2 1 2 1 1 1 1 2 2 2
E 1 2 1 1 2 1 1 2 1 1 2 1 2 1 1 1 1 2 2 2
F 2 2 2 2 2 2 2 2 2 1 2 2 2 2 2 2 2 2 2 2
G 1 2 1 1 2 0 2 2 1 2 2 1 2 1 1 1 2 2 2 2
H 1 2 1 1 2 2 1 2 1 1 1 1 2 1 1 1 2 2 2 1
I 1 1 2 2 2 2 2 1 2 1 1 2 2 2 2 2 1 1 2 2
K 1 2 1 1 2 1 1 2 1 1 2 1 2 1 1 1 2 2 2 2
L 1 1 1 1 1 2 1 1 1 0 1 1 1 1 1 1 1 1 2 1
M 1 2 2 2 2 2 1 1 2 1 2 2 2 2 2 2 2 1 2 2
N 1 2 1 1 2 1 1 2 1 1 2 1 2 1 1 1 1 2 2 1
P 1 2 2 2 2 2 2 2 2 1 2 2 1 2 2 2 2 1 3 2
Q 1 2 1 1 2 1 1 2 1 1 2 1 2 2 1 1 2 2 2 2
R 1 2 1 1 2 1 1 2 1 1 2 1 2 1 1 1 2 2 2 2
S 1 2 1 1 2 1 1 2 1 1 2 1 2 1 1 2 1 1 2 2
T 1 2 1 1 2 2 2 1 2 1 2 1 2 2 2 1 1 1 2 2
V 1 1 2 2 2 2 2 1 2 1 1 2 1 2 2 1 1 1 2 2
W 2 3 2 2 2 2 2 2 2 2 2 2 3 2 2 2 2 2 3 2
Y 1 2 2 2 2 2 1 2 2 1 2 1 2 2 2 2 2 2 2 2

Observed Probability of Transition

  A C D E F G H I K L M N P Q R S T V W Y
A 5.65462% 0.92549% 0.49024% 0.65868% 0.27604% 0.53509% 0.44684% 1.10722% 0.61875% 1.42333% 0.33385% 0.52711% 1.44931% 0.42061% 0.59508% 1.09051% 0.66686% 2.03953% 0.07381% 0.51039%
C 0.92549% 0.12533% 0.12662% 0.12969% 0.08269% 0.13571% 0.13251% 0.39123% 0.13850% 0.42708% 0.12658% 0.16919% 0.08246% 0.09997% 0.15503% 0.20550% 0.18637% 0.57864% 0.02856% 0.10755%
D 0.49024% 0.12662% 1.06688% 1.04172% 0.13618% 0.74020% 0.49983% 0.15555% 0.58893% 0.37557% 0.15808% 1.49666% 0.13907% 0.41718% 0.50892% 0.76943% 0.49020% 0.17678% 0.05868% 0.22039%
E 0.65868% 0.12969% 1.04172% 0.66355% 0.16211% 0.60532% 0.31783% 0.25931% 0.86405% 0.60744% 0.16500% 0.73645% 0.14656% 0.56306% 0.72293% 0.64776% 0.32463% 0.29160% 0.08230% 0.27393%
F 0.27604% 0.08269% 0.13618% 0.16211% 0.05648% 0.09540% 0.20813% 0.22292% 0.14742% 0.69838% 0.12636% 0.18014% 0.03837% 0.11638% 0.18046% 0.14163% 0.12595% 0.25888% 0.05076% 0.15835%
G 0.53509% 0.13571% 0.74020% 0.60532% 0.09540% 3.80968% 0.28074% 0.10191% 0.61626% 0.29592% 0.10660% 1.17614% 0.14569% 0.35245% 0.51716% 0.47328% 0.20305% 0.14612% 0.04290% 0.16284%
H 0.44684% 0.13251% 0.49983% 0.31783% 0.20813% 0.28074% 1.13581% 0.30277% 0.36868% 0.47023% 0.83892% 0.69338% 0.04529% 0.35442% 0.44092% 0.42904% 0.22273% 0.19594% 0.07712% 0.37375%
I 1.10722% 0.39123% 0.15555% 0.25931% 0.22292% 0.10191% 0.30277% 0.58408% 0.23385% 2.21187% 0.37271% 0.14369% 0.22147% 0.17875% 0.24933% 0.28880% 0.37339% 1.54382% 0.08047% 0.27134%
K 0.61875% 0.13850% 0.58893% 0.86405% 0.14742% 0.61626% 0.36868% 0.23385% 0.47352% 0.51443% 0.14773% 0.61039% 0.12284% 0.54681% 0.81099% 0.54539% 0.29102% 0.30390% 0.06597% 0.26842%
L 1.42333% 0.42708% 0.37557% 0.60744% 0.69838% 0.29592% 0.47023% 2.21187% 0.51443% 7.48646% 0.71245% 0.38250% 0.34672% 0.38320% 0.56361% 0.48770% 0.61103% 2.12068% 0.18078% 0.63695%
M 0.33385% 0.12658% 0.15808% 0.16500% 0.12636% 0.10660% 0.83892% 0.37271% 0.14773% 0.71245% 0.23450% 0.14254% 0.04175% 0.13770% 0.17332% 0.17093% 0.16293% 0.37807% 0.05425% 0.16590%
N 0.52711% 0.16919% 1.49666% 0.73645% 0.18014% 1.17614% 0.69338% 0.14369% 0.61039% 0.38250% 0.14254% 0.89027% 0.09629% 0.42228% 0.63456% 0.72459% 0.55988% 0.17404% 0.07907% 0.31806%
P 1.44931% 0.08246% 0.13907% 0.14656% 0.03837% 0.14569% 0.04529% 0.22147% 0.12284% 0.34672% 0.04175% 0.09629% 0.70805% 0.08103% 0.11161% 0.15689% 0.15017% 0.39324% 0.00735% 0.04396%
Q 0.42061% 0.09997% 0.41718% 0.56306% 0.11638% 0.35245% 0.35442% 0.17875% 0.54681% 0.38320% 0.13770% 0.42228% 0.08103% 0.19639% 0.53423% 0.37415% 0.21063% 0.21733% 0.05412% 0.19687%
R 0.59508% 0.15503% 0.50892% 0.72293% 0.18046% 0.51716% 0.44092% 0.24933% 0.81099% 0.56361% 0.17332% 0.63456% 0.11161% 0.53423% 0.40827% 0.50889% 0.31136% 0.30668% 0.09823% 0.31045%
S 1.09051% 0.20550% 0.76943% 0.64776% 0.14163% 0.47328% 0.42904% 0.28880% 0.54539% 0.48770% 0.17093% 0.72459% 0.15689% 0.37415% 0.50889% 0.31617% 0.86836% 0.38072% 0.05439% 0.24745%
T 0.66686% 0.18637% 0.49020% 0.32463% 0.12595% 0.20305% 0.22273% 0.37339% 0.29102% 0.61103% 0.16293% 0.55988% 0.15017% 0.21063% 0.31136% 0.86836% 1.99194% 0.53245% 0.04082% 0.19896%
V 2.03953% 0.57864% 0.17678% 0.29160% 0.25888% 0.14612% 0.19594% 1.54382% 0.30390% 2.12068% 0.37807% 0.17404% 0.39324% 0.21733% 0.30668% 0.38072% 0.53245% 1.53754% 0.06725% 0.26457%
W 0.07381% 0.02856% 0.05868% 0.08230% 0.05076% 0.04290% 0.07712% 0.08047% 0.06597% 0.18078% 0.05425% 0.07907% 0.00735% 0.05412% 0.09823% 0.05439% 0.04082% 0.06725% 0.02234% 0.08818%
Y 0.51039% 0.10755% 0.22039% 0.27393% 0.15835% 0.16284% 0.37375% 0.27134% 0.26842% 0.63695% 0.16590% 0.31806% 0.04396% 0.19687% 0.31045% 0.24745% 0.19896% 0.26457% 0.08818% 0.14760%

Expected Probability of Transition

  A C D E F G H I K L M N P Q R S T V W Y
A 1.62537% 0.57117% 1.36721% 1.26566% 0.44871% 1.82977% 1.14368% 1.25943% 1.11572% 3.62364% 0.63551% 1.40846% 0.66757% 0.77183% 1.09009% 1.17263% 1.34053% 1.71416% 0.16953% 0.65193%
C 0.57117% 0.05017% 0.24022% 0.22238% 0.07884% 0.32149% 0.20095% 0.22128% 0.19603% 0.63669% 0.11166% 0.24747% 0.11729% 0.13561% 0.19153% 0.20603% 0.23553% 0.30118% 0.02978% 0.11454%
D 1.36721% 0.24022% 0.28751% 0.53232% 0.18872% 0.76957% 0.48101% 0.52969% 0.46925% 1.52404% 0.26728% 0.59237% 0.28077% 0.32462% 0.45847% 0.49319% 0.56380% 0.72095% 0.07130% 0.27419%
E 1.26566% 0.22238% 0.53232% 0.24639% 0.17470% 0.71241% 0.44529% 0.49035% 0.43440% 1.41085% 0.24743% 0.54837% 0.25991% 0.30050% 0.42442% 0.45656% 0.52193% 0.66740% 0.06600% 0.25382%
F 0.44871% 0.07884% 0.18872% 0.17470% 0.03096% 0.25257% 0.15786% 0.17384% 0.15400% 0.50018% 0.08772% 0.19441% 0.09214% 0.10653% 0.15047% 0.16186% 0.18503% 0.23661% 0.02340% 0.08998%
G 1.82977% 0.32149% 0.76957% 0.71241% 0.25257% 0.51496% 0.64375% 0.70890% 0.62801% 2.03966% 0.35771% 0.79278% 0.37576% 0.43444% 0.61358% 0.66004% 0.75455% 0.96486% 0.09542% 0.36695%
H 1.14368% 0.20095% 0.48101% 0.44529% 0.15786% 0.64375% 0.20118% 0.44309% 0.39253% 1.27487% 0.22358% 0.49552% 0.23486% 0.27154% 0.38351% 0.41256% 0.47162% 0.60308% 0.05964% 0.22936%
I 1.25943% 0.22128% 0.52969% 0.49035% 0.17384% 0.70890% 0.44309% 0.24397% 0.43226% 1.40390% 0.24621% 0.54567% 0.25863% 0.29902% 0.42233% 0.45431% 0.51936% 0.66411% 0.06568% 0.25257%
K 1.11572% 0.19603% 0.46925% 0.43440% 0.15400% 0.62801% 0.39253% 0.43226% 0.19147% 1.24371% 0.21812% 0.48341% 0.22912% 0.26490% 0.37414% 0.40247% 0.46009% 0.58833% 0.05818% 0.22375%
L 3.62364% 0.63669% 1.52404% 1.41085% 0.50018% 2.03966% 1.27487% 1.40390% 1.24371% 2.01964% 0.70840% 1.57002% 0.74414% 0.86036% 1.21513% 1.30714% 1.49429% 1.91078% 0.18898% 0.72671%
M 0.63551% 0.11166% 0.26728% 0.24743% 0.08772% 0.35771% 0.22358% 0.24621% 0.21812% 0.70840% 0.06212% 0.27534% 0.13050% 0.15089% 0.21310% 0.22924% 0.26206% 0.33511% 0.03314% 0.12745%
N 1.40846% 0.24747% 0.59237% 0.54837% 0.19441% 0.79278% 0.49552% 0.54567% 0.48341% 1.57002% 0.27534% 0.30512% 0.28924% 0.33441% 0.47230% 0.50807% 0.58081% 0.74269% 0.07345% 0.28246%
P 0.66757% 0.11729% 0.28077% 0.25991% 0.09214% 0.37576% 0.23486% 0.25863% 0.22912% 0.74414% 0.13050% 0.28924% 0.06854% 0.15850% 0.22386% 0.24081% 0.27529% 0.35201% 0.03481% 0.13388%
Q 0.77183% 0.13561% 0.32462% 0.30050% 0.10653% 0.43444% 0.27154% 0.29902% 0.26490% 0.86036% 0.15089% 0.33441% 0.15850% 0.09162% 0.25882% 0.27842% 0.31828% 0.40699% 0.04025% 0.15479%
R 1.09009% 0.19153% 0.45847% 0.42442% 0.15047% 0.61358% 0.38351% 0.42233% 0.37414% 1.21513% 0.21310% 0.47230% 0.22386% 0.25882% 0.18277% 0.39322% 0.44952% 0.57481% 0.05685% 0.21861%
S 1.17263% 0.20603% 0.49319% 0.45656% 0.16186% 0.66004% 0.41256% 0.45431% 0.40247% 1.30714% 0.22924% 0.50807% 0.24081% 0.27842% 0.39322% 0.21150% 0.48356% 0.61834% 0.06115% 0.23517%
T 1.34053% 0.23553% 0.56380% 0.52193% 0.18503% 0.75455% 0.47162% 0.51936% 0.46009% 1.49429% 0.26206% 0.58081% 0.27529% 0.31828% 0.44952% 0.48356% 0.27640% 0.70687% 0.06991% 0.26884%
V 1.71416% 0.30118% 0.72095% 0.66740% 0.23661% 0.96486% 0.60308% 0.66411% 0.58833% 1.91078% 0.33511% 0.74269% 0.35201% 0.40699% 0.57481% 0.61834% 0.70687% 0.45194% 0.08939% 0.34377%
W 0.16953% 0.02978% 0.07130% 0.06600% 0.02340% 0.09542% 0.05964% 0.06568% 0.05818% 0.18898% 0.03314% 0.07345% 0.03481% 0.04025% 0.05685% 0.06115% 0.06991% 0.08939% 0.00442% 0.03400%
Y 0.65193% 0.11454% 0.27419% 0.25382% 0.08998% 0.36695% 0.22936% 0.25257% 0.22375% 0.72671% 0.12745% 0.28246% 0.13388% 0.15479% 0.21861% 0.23517% 0.26884% 0.34377% 0.03400% 0.06537%

Transition Count

  A C D E F G H I K L M N P Q R S T V W Y
A 176268856 28849853 15282172 20532785 8604983 16680157 13929202 34515109 19288202 44368811 10407071 16431446 45178623 13111625 18550392 33993957 20787901 63577327 2300923 15910390
C 28849853 3906965 3947203 4042772 2577893 4230690 4130853 12195774 4317684 13313225 3946030 5274114 2570481 3116520 4832714 6406101 5809830 18037870 890544 3352643
D 15282172 3947203 33257520 32473131 4245262 23074031 15581178 4849041 18358517 11707561 4927946 46654906 4335196 13004824 15864364 23985329 15280792 5510927 1829267 6870258
E 20532785 4042772 32473131 20684789 5053568 18869616 9907698 8083464 26934590 18935436 5143757 22957043 4568914 17552193 22535792 20192477 10119550 9089947 2565640 8539139
F 8604983 2577893 4245262 5053568 1760653 2974101 6488005 6949077 4595621 21770458 3939232 5615553 1196217 3627910 5625410 4414995 3926270 8069988 1582499 4936174
G 16680157 4230690 23074031 18869616 2974101 118757498 8751569 3176830 19210428 9224642 3323057 36663290 4541621 10986820 16121280 14753388 6329810 4555146 1337488 5076420
H 13929202 4130853 15581178 9907698 6488005 8751569 35406287 9438315 11492936 14658367 26151300 21614616 1411873 11048256 13744740 13374311 6943125 6108003 2404164 11650791
I 34515109 12195774 4849041 8083464 6949077 3176830 9438315 18207390 7289764 68949775 11618299 4479402 6903844 5572371 7772488 9002867 11639706 48124870 2508685 8458433
K 19288202 4317684 18358517 26934590 4595621 19210428 11492936 7289764 14761072 16036300 4605220 19027556 3829228 17045455 25280854 17001349 9071960 9473371 2056744 8367599
L 44368811 13313225 11707561 18935436 21770458 9224642 14658367 68949775 16036300 233371809 22208908 11923495 10808295 11945462 17569223 15202969 19047475 66107029 5635605 19855395
M 10407071 3946030 4927946 5143757 3939232 3323057 26151300 11618299 4605220 22208908 7310224 4443553 1301734 4292481 5402925 5328471 5078927 11785629 1691340 5171681
N 16431446 5274114 46654906 22957043 5615553 36663290 21614616 4479402 19027556 11923495 4443553 27751964 3001657 13163510 19780905 22587469 17453149 5425470 2464822 9914849
P 45178623 2570481 4335196 4568914 1196217 4541621 1411873 6903844 3829228 10808295 1301734 3001657 22071830 2526186 3479262 4890780 4681248 12258552 229262 1370588
Q 13111625 3116520 13004824 17552193 3627910 10986820 11048256 5572371 17045455 11945462 4292481 13163510 2526186 6121973 16653471 11663478 6565997 6774942 1687112 6136981
R 18550392 4832714 15864364 22535792 5625410 16121280 13744740 7772488 25280854 17569223 5402925 19780905 3479262 16653471 12726941 15863558 9706011 9560246 3062125 9677514
S 33993957 6406101 23985329 20192477 4414995 14753388 13374311 9002867 17001349 15202969 5328471 22587469 4890780 11663478 15863558 9855982 27068983 11868235 1695571 7713918
T 20787901 5809830 15280792 10119550 3926270 6329810 6943125 11639706 9071960 19047475 5078927 17453149 4681248 6565997 9706011 27068983 62094020 16597962 1272579 6202247
V 63577327 18037870 5510927 9089947 8069988 4555146 6108003 48124870 9473371 66107029 11785629 5425470 12258552 6774942 9560246 11868235 16597962 47929128 2096426 8247409
W 2300923 890544 1829267 2565640 1582499 1337488 2404164 2508685 2056744 5635605 1691340 2464822 229262 1687112 3062125 1695571 1272579 2096426 696634 2749046
Y 15910390 3352643 6870258 8539139 4936174 5076420 11650791 8458433 8367599 19855395 5171681 9914849 1370588 6136981 9677514 7713918 6202247 8247409 2749046 4601170

Number of Amino Acids in Alignment

  A C D E F G H I K L M N P Q R S T V W Y
A 57594 - - - - - - - - - - - - - - - - - - -
C - 10123 - - - - - - - - - - - - - - - - - -
D - - 26800 - - - - - - - - - - - - - - - - -
E - - - 23354 - - - - - - - - - - - - - - - -
F - - - - 8085 - - - - - - - - - - - - - - -
G - - - - - 33825 - - - - - - - - - - - - - -
H - - - - - - 20040 - - - - - - - - - - - - -
I - - - - - - - 22461 - - - - - - - - - - - -
K - - - - - - - - 20933 - - - - - - - - - - -
L - - - - - - - - - 62652 - - - - - - - - - -
M - - - - - - - - - - 11028 - - - - - - - - -
N - - - - - - - - - - - 27176 - - - - - - - -
P - - - - - - - - - - - - 12570 - - - - - - -
Q - - - - - - - - - - - - - 14231 - - - - - -
R - - - - - - - - - - - - - - 20039 - - - - -
S - - - - - - - - - - - - - - - 22106 - - - -
T - - - - - - - - - - - - - - - - 24352 - - -
V - - - - - - - - - - - - - - - - - 30566 - -
W - - - - - - - - - - - - - - - - - - 2954 -
Y - - - - - - - - - - - - - - - - - - - 11673

Percentage of Amino Acids in Alignment

  A C D E F G H I K L M N P Q R S T V W Y
A 12.4% - - - - - - - - - - - - - - - - - - -
C - 2.18% - - - - - - - - - - - - - - - - - -
D - - 5.79% - - - - - - - - - - - - - - - - -
E - - - 5.04% - - - - - - - - - - - - - - - -
F - - - - 1.74% - - - - - - - - - - - - - - -
G - - - - - 7.31% - - - - - - - - - - - - - -
H - - - - - - 4.33% - - - - - - - - - - - - -
I - - - - - - - 4.85% - - - - - - - - - - - -
K - - - - - - - - 4.52% - - - - - - - - - - -
L - - - - - - - - - 13.5% - - - - - - - - - -
M - - - - - - - - - - 2.38% - - - - - - - - -
N - - - - - - - - - - - 5.87% - - - - - - - -
P - - - - - - - - - - - - 2.71% - - - - - - -
Q - - - - - - - - - - - - - 3.07% - - - - - -
R - - - - - - - - - - - - - - 4.33% - - - - -
S - - - - - - - - - - - - - - - 4.77% - - - -
T - - - - - - - - - - - - - - - - 5.26% - - -
V - - - - - - - - - - - - - - - - - 6.60% - -
W - - - - - - - - - - - - - - - - - - 0.63% -
Y - - - - - - - - - - - - - - - - - - - 2.52%