Cytochrome b(C-terminal)/b6/petD

Accession number: PF00032

Blosum Log2 No Clustering

  A C D E F G H I K L M N P Q R S T V W Y
A 7 -1 -9 -11 -2 -3 -6 -4 -11 -3 -1 -6 -7 -8 -11 -2 -2 -2 -16 -10
C -1 11 -3 -15 2 -1 -10 1 -7 0 1 -5 -8 -1 -2 0 1 0 -3 -5
D -9 -3 13 -3 -12 -9 2 -4 -12 -11 -9 8 -8 -7 -11 -7 0 -4 -23 -4
E -11 -15 -3 11 -17 -9 -2 -9 -7 -15 -11 -8 -8 -6 -12 -7 -11 -9 -23 -10
F -2 2 -12 -17 7 -12 -9 -3 -7 -2 0 -14 -7 -8 -8 -7 -5 -4 -9 0
G -3 -1 -9 -9 -12 9 -11 -12 -12 -9 -7 -11 -13 -10 -6 0 -3 -10 -9 -10
H -6 -10 2 -2 -9 -11 10 -13 -4 -10 -9 -2 -5 -2 -5 -5 -8 -13 -15 -1
I -4 1 -4 -9 -3 -12 -13 5 -9 -2 -1 -7 -8 -9 -13 -7 -1 2 -12 -9
K -11 -7 -12 -7 -7 -12 -4 -9 9 -10 -4 -4 -6 2 -4 -5 -1 -4 -10 -6
L -3 0 -11 -15 -2 -9 -10 -2 -10 4 2 -9 -9 -4 -11 -6 -3 -1 -10 -7
M -1 1 -9 -11 0 -7 -9 -1 -4 2 6 -4 -5 2 -6 -3 2 0 -12 -6
N -6 -5 8 -8 -14 -11 -2 -7 -4 -9 -4 9 -10 -7 -5 -2 -3 0 -18 -10
P -7 -8 -8 -8 -7 -13 -5 -8 -6 -9 -5 -10 6 -6 -9 -7 -9 -6 -15 -11
Q -8 -1 -7 -6 -8 -10 -2 -9 2 -4 2 -7 -6 9 -1 -8 -6 -4 -11 -9
R -11 -2 -11 -12 -8 -6 -5 -13 -4 -11 -6 -5 -9 -1 10 -5 -9 -13 -8 -3
S -2 0 -7 -7 -7 0 -5 -7 -5 -6 -3 -2 -7 -8 -5 7 1 -4 -15 -9
T -2 1 0 -11 -5 -3 -8 -1 -1 -3 2 -3 -9 -6 -9 1 7 -2 -13 -8
V -2 0 -4 -9 -4 -10 -13 2 -4 -1 0 0 -6 -4 -13 -4 -2 6 -12 -11
W -16 -3 -23 -23 -9 -9 -15 -12 -10 -10 -12 -18 -15 -11 -8 -15 -13 -12 10 -8
Y -10 -5 -4 -10 0 -10 -1 -9 -6 -7 -6 -10 -11 -9 -3 -9 -8 -11 -8 9

Blosum LN No Clustering

  A C D E F G H I K L M N P Q R S T V W Y
A 5 -1 -6 -8 -2 -2 -4 -3 -7 -2 -1 -4 -5 -6 -8 -1 -1 -1 -11 -7
C -1 8 -2 -11 2 0 -7 1 -5 0 1 -4 -6 0 -1 0 1 0 -2 -4
D -6 -2 9 -2 -8 -6 1 -3 -8 -7 -6 5 -5 -5 -8 -5 0 -3 -16 -3
E -8 -11 -2 8 -12 -6 -1 -6 -5 -11 -8 -5 -6 -4 -8 -5 -8 -7 -16 -7
F -2 2 -8 -12 5 -8 -6 -2 -5 -1 0 -9 -5 -6 -6 -5 -3 -3 -6 0
G -2 0 -6 -6 -8 6 -8 -8 -8 -7 -5 -8 -9 -7 -4 0 -2 -7 -6 -7
H -4 -7 1 -1 -6 -8 7 -9 -3 -7 -6 -1 -4 -1 -3 -3 -5 -9 -10 -1
I -3 1 -3 -6 -2 -8 -9 4 -6 -1 -1 -5 -6 -6 -9 -5 -1 1 -8 -6
K -7 -5 -8 -5 -5 -8 -3 -6 6 -7 -2 -2 -4 1 -3 -3 -1 -2 -7 -4
L -2 0 -7 -11 -1 -7 -7 -1 -7 3 1 -6 -6 -3 -8 -4 -2 -1 -7 -5
M -1 1 -6 -8 0 -5 -6 -1 -2 1 4 -2 -3 1 -4 -2 1 0 -8 -4
N -4 -4 5 -5 -9 -8 -1 -5 -2 -6 -2 6 -7 -5 -3 -2 -2 0 -13 -7
P -5 -6 -5 -6 -5 -9 -4 -6 -4 -6 -3 -7 4 -4 -6 -5 -6 -4 -11 -7
Q -6 0 -5 -4 -6 -7 -1 -6 1 -3 1 -5 -4 6 0 -5 -4 -3 -8 -6
R -8 -1 -8 -8 -6 -4 -3 -9 -3 -8 -4 -3 -6 0 7 -3 -6 -9 -6 -2
S -1 0 -5 -5 -5 0 -3 -5 -3 -4 -2 -2 -5 -5 -3 5 1 -3 -10 -6
T -1 1 0 -8 -3 -2 -5 -1 -1 -2 1 -2 -6 -4 -6 1 5 -1 -9 -6
V -1 0 -3 -7 -3 -7 -9 1 -2 -1 0 0 -4 -3 -9 -3 -1 4 -8 -8
W -11 -2 -16 -16 -6 -6 -10 -8 -7 -7 -8 -13 -11 -8 -6 -10 -9 -8 7 -6
Y -7 -4 -3 -7 0 -7 -1 -6 -4 -5 -4 -7 -7 -6 -2 -6 -6 -8 -6 6

Blosum Log10 No Clustering

  A C D E F G H I K L M N P Q R S T V W Y
A 2 0 -3 -3 -1 -1 -2 -1 -3 -1 0 -2 -2 -3 -3 -1 -1 -1 -5 -3
C 0 3 -1 -5 1 0 -3 0 -2 0 0 -2 -2 0 -1 0 0 0 -1 -2
D -3 -1 4 -1 -4 -3 1 -1 -4 -3 -3 2 -2 -2 -3 -2 0 -1 -7 -1
E -3 -5 -1 3 -5 -3 -1 -3 -2 -5 -3 -2 -2 -2 -4 -2 -3 -3 -7 -3
F -1 1 -4 -5 2 -4 -3 -1 -2 -1 0 -4 -2 -3 -2 -2 -1 -1 -3 0
G -1 0 -3 -3 -4 3 -3 -4 -4 -3 -2 -3 -4 -3 -2 0 -1 -3 -3 -3
H -2 -3 1 -1 -3 -3 3 -4 -1 -3 -3 -1 -2 -1 -1 -1 -2 -4 -4 0
I -1 0 -1 -3 -1 -4 -4 2 -3 0 0 -2 -2 -3 -4 -2 0 1 -4 -3
K -3 -2 -4 -2 -2 -4 -1 -3 3 -3 -1 -1 -2 1 -1 -1 0 -1 -3 -2
L -1 0 -3 -5 -1 -3 -3 0 -3 1 1 -3 -3 -1 -3 -2 -1 0 -3 -2
M 0 0 -3 -3 0 -2 -3 0 -1 1 2 -1 -1 1 -2 -1 0 0 -4 -2
N -2 -2 2 -2 -4 -3 -1 -2 -1 -3 -1 3 -3 -2 -2 -1 -1 0 -6 -3
P -2 -2 -2 -2 -2 -4 -2 -2 -2 -3 -1 -3 2 -2 -3 -2 -3 -2 -5 -3
Q -3 0 -2 -2 -3 -3 -1 -3 1 -1 1 -2 -2 3 0 -2 -2 -1 -3 -3
R -3 -1 -3 -4 -2 -2 -1 -4 -1 -3 -2 -2 -3 0 3 -1 -3 -4 -3 -1
S -1 0 -2 -2 -2 0 -1 -2 -1 -2 -1 -1 -2 -2 -1 2 0 -1 -4 -3
T -1 0 0 -3 -1 -1 -2 0 0 -1 0 -1 -3 -2 -3 0 2 0 -4 -3
V -1 0 -1 -3 -1 -3 -4 1 -1 0 0 0 -2 -1 -4 -1 0 2 -4 -3
W -5 -1 -7 -7 -3 -3 -4 -4 -3 -3 -4 -6 -5 -3 -3 -4 -4 -4 3 -3
Y -3 -2 -1 -3 0 -3 0 -3 -2 -2 -2 -3 -3 -3 -1 -3 -3 -3 -3 3

Distance Log2

  A C D E F G H I K L M N P Q R S T V W Y
A 3 11 14 13 7 8 10 7 12 6 8 10 8 11 13 7 7 7 15 11
C 11 11 16 20 9 12 17 9 15 9 12 15 14 12 13 11 10 11 13 14
D 14 16 8 13 15 15 10 11 17 13 15 7 13 14 16 13 10 12 22 12
E 13 20 13 5 16 13 10 11 12 14 15 13 11 12 15 11 13 12 20 14
F 7 9 15 16 3 12 12 7 10 5 7 14 9 11 11 9 8 8 12 7
G 8 12 15 13 12 4 13 12 13 10 11 13 12 13 11 6 8 12 12 12
H 10 17 10 10 12 13 4 13 10 11 13 9 9 9 11 10 11 14 16 8
I 7 9 11 11 7 12 13 3 11 5 7 10 9 11 13 9 6 4 12 10
K 12 15 17 12 10 13 10 11 4 10 10 10 9 7 10 9 8 9 13 11
L 6 9 13 14 5 10 11 5 10 2 5 10 8 8 11 8 6 5 11 9
M 8 12 15 15 7 11 13 7 10 5 7 10 9 7 12 9 7 8 14 11
N 10 15 7 13 14 13 9 10 10 10 10 4 12 11 11 8 9 7 17 13
P 8 14 13 11 9 12 9 9 9 8 9 12 2 9 11 9 10 8 14 11
Q 11 12 14 12 11 13 9 11 7 8 7 11 9 4 8 11 10 9 13 12
R 13 13 16 15 11 11 11 13 10 11 12 11 11 8 4 10 12 14 12 9
S 7 11 13 11 9 6 10 9 9 8 9 8 9 11 10 4 6 8 15 11
T 7 10 10 13 8 8 11 6 8 6 7 9 10 10 12 6 4 7 14 11
V 7 11 12 12 8 12 14 4 9 5 8 7 8 9 14 8 7 4 13 12
W 15 13 22 20 12 12 16 12 13 11 14 17 14 13 12 15 14 13 4 12
Y 11 14 12 14 7 12 8 10 11 9 11 13 11 12 9 11 11 12 12 4

Distance LN

  A C D E F G H I K L M N P Q R S T V W Y
A 2 7 9 9 4 5 7 5 8 4 5 6 5 7 8 4 5 4 10 8
C 7 8 11 14 6 8 11 6 10 6 8 10 10 8 9 7 7 7 9 10
D 9 11 5 9 10 10 6 7 11 9 10 4 9 10 11 9 7 8 15 8
E 9 14 9 3 11 8 7 8 8 9 10 8 7 8 10 8 9 8 14 9
F 4 6 10 11 2 8 8 4 7 3 5 9 6 7 7 6 6 5 8 4
G 5 8 10 8 8 2 9 8 9 6 8 9 8 8 7 4 6 8 8 8
H 7 11 6 7 8 9 3 9 7 7 9 6 6 6 7 7 8 9 11 6
I 5 6 7 8 4 8 9 2 7 3 5 6 6 7 9 6 4 3 8 7
K 8 10 11 8 7 9 7 7 3 7 7 6 6 5 7 6 5 6 9 7
L 4 6 9 9 3 6 7 3 7 1 3 7 5 5 8 5 4 3 7 6
M 5 8 10 10 5 8 9 5 7 3 4 7 6 5 8 6 4 5 10 7
N 6 10 4 8 9 9 6 6 6 7 7 3 8 8 7 6 6 5 12 8
P 5 10 9 7 6 8 6 6 6 5 6 8 1 6 7 6 7 6 9 8
Q 7 8 10 8 7 8 6 7 5 5 5 8 6 3 5 7 7 6 9 8
R 8 9 11 10 7 7 7 9 7 8 8 7 7 5 3 6 8 9 8 6
S 4 7 9 8 6 4 7 6 6 5 6 6 6 7 6 2 4 6 10 8
T 5 7 7 9 6 6 8 4 5 4 4 6 7 7 8 4 2 5 9 7
V 4 7 8 8 5 8 9 3 6 3 5 5 6 6 9 6 5 3 9 8
W 10 9 15 14 8 8 11 8 9 7 10 12 9 9 8 10 9 9 3 8
Y 8 10 8 9 4 8 6 7 7 6 7 8 8 8 6 8 7 8 8 2

Distance Log10

  A C D E F G H I K L M N P Q R S T V W Y
A 0 3 3 3 1 2 2 1 3 1 2 2 2 3 3 1 1 1 4 3
C 3 3 4 5 2 3 4 2 4 2 3 4 4 3 3 3 2 3 3 4
D 3 4 2 3 4 4 2 3 4 3 4 1 3 4 4 3 2 3 6 3
E 3 5 3 1 4 3 2 3 3 3 4 3 3 3 4 3 3 3 5 3
F 1 2 4 4 0 3 3 1 2 1 1 3 2 3 3 2 2 2 3 1
G 2 3 4 3 3 0 3 3 3 2 3 3 3 3 2 1 2 3 3 3
H 2 4 2 2 3 3 1 3 2 3 3 2 2 2 2 2 3 4 4 2
I 1 2 3 3 1 3 3 0 3 1 1 2 2 2 3 2 1 1 3 2
K 3 4 4 3 2 3 2 3 1 2 2 2 2 1 2 2 2 2 3 3
L 1 2 3 3 1 2 3 1 2 0 1 2 2 2 3 2 1 1 2 2
M 2 3 4 4 1 3 3 1 2 1 1 2 2 1 3 2 1 2 4 3
N 2 4 1 3 3 3 2 2 2 2 2 1 3 3 2 2 2 1 4 3
P 2 4 3 3 2 3 2 2 2 2 2 3 0 2 3 2 2 2 4 3
Q 3 3 4 3 3 3 2 2 1 2 1 3 2 1 2 3 2 2 3 3
R 3 3 4 4 3 2 2 3 2 3 3 2 3 2 1 2 3 3 3 2
S 1 3 3 3 2 1 2 2 2 2 2 2 2 3 2 0 1 2 4 3
T 1 2 2 3 2 2 3 1 2 1 1 2 2 2 3 1 1 1 3 3
V 1 3 3 3 2 3 4 1 2 1 2 1 2 2 3 2 1 1 3 3
W 4 3 6 5 3 3 4 3 3 2 4 4 4 3 3 4 3 3 1 3
Y 3 4 3 3 1 3 2 2 3 2 3 3 3 3 2 3 3 3 3 1

Observed Probability of Transition

  A C D E F G H I K L M N P Q R S T V W Y
A 5.61890% 0.02141% 0.00386% 0.00687% 0.48943% 0.26879% 0.05241% 0.36962% 0.01202% 0.90387% 0.25851% 0.06631% 0.15492% 0.02755% 0.00860% 0.43602% 0.40013% 0.47450% 0.00208% 0.01953%
C 0.02141% 0.01995% 0.00089% 0.00004% 0.07296% 0.01543% 0.00039% 0.06993% 0.00140% 0.07193% 0.01418% 0.00208% 0.00274% 0.01100% 0.00694% 0.02366% 0.03697% 0.02954% 0.00523% 0.00240%
D 0.00386% 0.00089% 0.20308% 0.00672% 0.00127% 0.00182% 0.05573% 0.02429% 0.00047% 0.00441% 0.00126% 0.42178% 0.00675% 0.00268% 0.00057% 0.00538% 0.04945% 0.01259% 0.00001% 0.00963%
E 0.00687% 0.00004% 0.00672% 1.91937% 0.00073% 0.00764% 0.05412% 0.01881% 0.01064% 0.00323% 0.00209% 0.00801% 0.02454% 0.01560% 0.00172% 0.01805% 0.00495% 0.00892% 0.00004% 0.00401%
F 0.48943% 0.07296% 0.00127% 0.00073% 5.26329% 0.01103% 0.01513% 0.50259% 0.03948% 1.16077% 0.32718% 0.00399% 0.13567% 0.02513% 0.02664% 0.07474% 0.14337% 0.21011% 0.01712% 0.53850%
G 0.26879% 0.01543% 0.00182% 0.00764% 0.01103% 3.85625% 0.00447% 0.01572% 0.00456% 0.05535% 0.01922% 0.00542% 0.00966% 0.00804% 0.03369% 0.56315% 0.14304% 0.01533% 0.01340% 0.00908%
H 0.05241% 0.00039% 0.05573% 0.05412% 0.01513% 0.00447% 2.22885% 0.00641% 0.03540% 0.02563% 0.00584% 0.08437% 0.08288% 0.08704% 0.03195% 0.05426% 0.01924% 0.00297% 0.00091% 0.14329%
I 0.36962% 0.06993% 0.02429% 0.01881% 0.50259% 0.01572% 0.00641% 6.93504% 0.02748% 2.02200% 0.38904% 0.05990% 0.12211% 0.03390% 0.00727% 0.10002% 0.80109% 2.24098% 0.01054% 0.03574%
K 0.01202% 0.00140% 0.00047% 0.01064% 0.03948% 0.00456% 0.03540% 0.02748% 2.59756% 0.03500% 0.04624% 0.05795% 0.08585% 0.38039% 0.04541% 0.06963% 0.21757% 0.10661% 0.00675% 0.02781%
L 0.90387% 0.07193% 0.00441% 0.00323% 1.16077% 0.05535% 0.02563% 2.02200% 0.03500% 12.4441% 1.49411% 0.04431% 0.16489% 0.24236% 0.01951% 0.19853% 0.73259% 1.15941% 0.03447% 0.10382%
M 0.25851% 0.01418% 0.00126% 0.00209% 0.32718% 0.01922% 0.00584% 0.38904% 0.04624% 1.49411% 0.50798% 0.04324% 0.09746% 0.32828% 0.01619% 0.10221% 0.44527% 0.25742% 0.00229% 0.02147%
N 0.06631% 0.00208% 0.42178% 0.00801% 0.00399% 0.00542% 0.08437% 0.05990% 0.05795% 0.04431% 0.04324% 2.34119% 0.01649% 0.02019% 0.03183% 0.14611% 0.11582% 0.31873% 0.00031% 0.00787%
P 0.15492% 0.00274% 0.00675% 0.02454% 0.13567% 0.00966% 0.08288% 0.12211% 0.08585% 0.16489% 0.09746% 0.01649% 9.54702% 0.08821% 0.02556% 0.09177% 0.05415% 0.14284% 0.00291% 0.01823%
Q 0.02755% 0.01100% 0.00268% 0.01560% 0.02513% 0.00804% 0.08704% 0.03390% 0.38039% 0.24236% 0.32828% 0.02019% 0.08821% 2.47914% 0.15230% 0.02316% 0.05014% 0.09445% 0.00451% 0.00974%
R 0.00860% 0.00694% 0.00057% 0.00172% 0.02664% 0.03369% 0.03195% 0.00727% 0.04541% 0.01951% 0.01619% 0.03183% 0.02556% 0.15230% 2.64535% 0.05737% 0.01350% 0.00324% 0.00936% 0.07436%
S 0.43602% 0.02366% 0.00538% 0.01805% 0.07474% 0.56315% 0.05426% 0.10002% 0.06963% 0.19853% 0.10221% 0.14611% 0.09177% 0.02316% 0.05737% 4.05495% 0.77100% 0.14396% 0.00207% 0.01783%
T 0.40013% 0.03697% 0.04945% 0.00495% 0.14337% 0.14304% 0.01924% 0.80109% 0.21757% 0.73259% 0.44527% 0.11582% 0.05415% 0.05014% 0.01350% 0.77100% 3.09722% 0.35044% 0.00330% 0.02085%
V 0.47450% 0.02954% 0.01259% 0.00892% 0.21011% 0.01533% 0.00297% 2.24098% 0.10661% 1.15941% 0.25742% 0.31873% 0.14284% 0.09445% 0.00324% 0.14396% 0.35044% 3.00161% 0.00534% 0.00904%
W 0.00208% 0.00523% 0.00001% 0.00004% 0.01712% 0.01340% 0.00091% 0.01054% 0.00675% 0.03447% 0.00229% 0.00031% 0.00291% 0.00451% 0.00936% 0.00207% 0.00330% 0.00534% 2.91838% 0.01176%
Y 0.01953% 0.00240% 0.00963% 0.00401% 0.53850% 0.00908% 0.14329% 0.03574% 0.02781% 0.10382% 0.02147% 0.00787% 0.01823% 0.00974% 0.07436% 0.01783% 0.02085% 0.00904% 0.01176% 3.13009%

Expected Probability of Transition

  A C D E F G H I K L M N P Q R S T V W Y
A 0.57868% 0.03264% 0.07727% 0.30699% 1.08953% 0.67836% 0.39711% 1.57678% 0.48730% 2.53810% 0.37180% 0.46686% 1.55351% 0.49926% 0.44553% 0.83746% 0.80387% 0.88165% 0.45409% 0.55876%
C 0.03264% 0.00046% 0.00218% 0.00865% 0.03073% 0.01913% 0.01120% 0.04447% 0.01374% 0.07158% 0.01048% 0.01316% 0.04381% 0.01408% 0.01256% 0.02362% 0.02267% 0.02486% 0.01280% 0.01575%
D 0.07727% 0.00218% 0.00258% 0.02049% 0.07274% 0.04529% 0.02651% 0.10527% 0.03253% 0.16946% 0.02482% 0.03117% 0.10372% 0.03333% 0.02974% 0.05591% 0.05367% 0.05886% 0.03031% 0.03730%
E 0.30699% 0.00865% 0.02049% 0.04071% 0.28899% 0.17993% 0.10533% 0.41823% 0.12925% 0.67322% 0.09862% 0.12383% 0.41206% 0.13242% 0.11817% 0.22213% 0.21322% 0.23385% 0.12044% 0.14821%
F 1.08953% 0.03073% 0.07274% 0.28899% 0.51283% 0.63860% 0.37383% 1.48435% 0.45874% 2.38932% 0.35000% 0.43950% 1.46245% 0.46999% 0.41942% 0.78837% 0.75675% 0.82997% 0.42747% 0.52600%
G 0.67836% 0.01913% 0.04529% 0.17993% 0.63860% 0.19880% 0.23275% 0.92418% 0.28561% 1.48763% 0.21792% 0.27364% 0.91055% 0.29262% 0.26113% 0.49085% 0.47117% 0.51675% 0.26615% 0.32750%
H 0.39711% 0.01120% 0.02651% 0.10533% 0.37383% 0.23275% 0.06812% 0.54101% 0.16720% 0.87085% 0.12757% 0.16018% 0.53303% 0.17130% 0.15287% 0.28734% 0.27582% 0.30250% 0.15580% 0.19171%
I 1.57678% 0.04447% 0.10527% 0.41823% 1.48435% 0.92418% 0.54101% 1.07408% 0.66389% 3.45784% 0.50653% 0.63604% 2.11647% 0.68018% 0.60698% 1.14094% 1.09518% 1.20113% 0.61864% 0.76124%
K 0.48730% 0.01374% 0.03253% 0.12925% 0.45874% 0.28561% 0.16720% 0.66389% 0.10258% 1.06864% 0.15654% 0.19657% 0.65409% 0.21021% 0.18758% 0.35260% 0.33846% 0.37121% 0.19119% 0.23526%
L 2.53810% 0.07158% 0.16946% 0.67322% 2.38932% 1.48763% 0.87085% 3.45784% 1.06864% 2.78299% 0.81535% 1.02382% 3.40682% 1.09486% 0.97705% 1.83654% 1.76288% 1.93343% 0.99581% 1.22535%
M 0.37180% 0.01048% 0.02482% 0.09862% 0.35000% 0.21792% 0.12757% 0.50653% 0.15654% 0.81535% 0.05972% 0.14997% 0.49906% 0.16038% 0.14312% 0.26903% 0.25824% 0.28322% 0.14587% 0.17950%
N 0.46686% 0.01316% 0.03117% 0.12383% 0.43950% 0.27364% 0.16018% 0.63604% 0.19657% 1.02382% 0.14997% 0.09416% 0.62666% 0.20139% 0.17972% 0.33781% 0.32427% 0.35564% 0.18317% 0.22539%
P 1.55351% 0.04381% 0.10372% 0.41206% 1.46245% 0.91055% 0.53303% 2.11647% 0.65409% 3.40682% 0.49906% 0.62666% 1.04262% 0.67014% 0.59803% 1.12410% 1.07902% 1.18341% 0.60951% 0.75001%
Q 0.49926% 0.01408% 0.03333% 0.13242% 0.46999% 0.29262% 0.17130% 0.68018% 0.21021% 1.09486% 0.16038% 0.20139% 0.67014% 0.10768% 0.19219% 0.36126% 0.34677% 0.38032% 0.19588% 0.24103%
R 0.44553% 0.01256% 0.02974% 0.11817% 0.41942% 0.26113% 0.15287% 0.60698% 0.18758% 0.97705% 0.14312% 0.17972% 0.59803% 0.19219% 0.08575% 0.32238% 0.30945% 0.33939% 0.17480% 0.21509%
S 0.83746% 0.02362% 0.05591% 0.22213% 0.78837% 0.49085% 0.28734% 1.14094% 0.35260% 1.83654% 0.26903% 0.33781% 1.12410% 0.36126% 0.32238% 0.30299% 0.58167% 0.63795% 0.32857% 0.40431%
T 0.80387% 0.02267% 0.05367% 0.21322% 0.75675% 0.47117% 0.27582% 1.09518% 0.33846% 1.76288% 0.25824% 0.32427% 1.07902% 0.34677% 0.30945% 0.58167% 0.27917% 0.61236% 0.31539% 0.38809%
V 0.88165% 0.02486% 0.05886% 0.23385% 0.82997% 0.51675% 0.30250% 1.20113% 0.37121% 1.93343% 0.28322% 0.35564% 1.18341% 0.38032% 0.33939% 0.63795% 0.61236% 0.33580% 0.34591% 0.42564%
W 0.45409% 0.01280% 0.03031% 0.12044% 0.42747% 0.26615% 0.15580% 0.61864% 0.19119% 0.99581% 0.14587% 0.18317% 0.60951% 0.19588% 0.17480% 0.32857% 0.31539% 0.34591% 0.08908% 0.21922%
Y 0.55876% 0.01575% 0.03730% 0.14821% 0.52600% 0.32750% 0.19171% 0.76124% 0.23526% 1.22535% 0.17950% 0.22539% 0.75001% 0.24103% 0.21509% 0.40431% 0.38809% 0.42564% 0.21922% 0.13488%

Transition Count

  A C D E F G H I K L M N P Q R S T V W Y
A 310079633 1181990 213507 379206 27009387 14833329 2892685 20397702 663811 49880155 14266248 3659553 8549691 1520495 474567 24061883 22081233 26185624 114967 1078222
C 1181990 1100996 49416 2420 4026672 851997 21525 3859124 77654 3969538 782511 115187 151302 607453 383284 1306048 2040361 1630628 288704 132536
D 213507 49416 11207340 371188 70193 100939 3075670 1340740 26273 243621 69780 23276314 372945 148183 31441 297411 2728911 695137 685 531816
E 379206 2420 371188 105920602 40302 421962 2987133 1038429 587337 178376 115794 442294 1354420 861018 95049 996601 273380 492634 2247 221425
F 27009387 4026672 70193 40302 290455075 608958 834967 27735968 2178877 64057682 18055629 220558 7487450 1387212 1470642 4124890 7912266 11594907 945094 29717284
G 14833329 851997 100939 421962 608958 212807595 247128 867722 251827 3054484 1060958 299495 533307 444151 1859556 31077799 7893973 846186 739469 501146
H 2892685 21525 3075670 2987133 834967 247128 122999508 354247 1953824 1414435 322479 4655990 4574125 4803644 1763620 2994709 1061856 164160 50384 7907701
I 20397702 3859124 1340740 1038429 27735968 867722 354247 382710901 1516848 111584686 21469380 3305562 6739098 1871272 401260 5519761 44208547 123668775 582054 1972605
K 663811 77654 26273 587337 2178877 251827 1953824 1516848 143346498 1931666 2551999 3197981 4738153 20991952 2505952 3842873 12006609 5883299 372773 1535116
L 49880155 3969538 243621 178376 64057682 3054484 1414435 111584686 1931666 686732767 82452687 2445461 9099843 13374675 1077049 10956077 40428444 63982147 1902599 5729381
M 14266248 782511 69780 115794 18055629 1060958 322479 21469380 2551999 82452687 28032938 2386445 5378846 18116514 893433 5640570 24572262 14206005 126761 1184931
N 3659553 115187 23276314 442294 220558 299495 4655990 3305562 3197981 2445461 2386445 129199136 910202 1114240 1756803 8063096 6391851 17589608 17454 434654
P 8549691 151302 372945 1354420 7487450 533307 4574125 6739098 4738153 9099843 5378846 910202 526853239 4868367 1410924 5064821 2988344 7882944 160932 1006025
Q 1520495 607453 148183 861018 1387212 444151 4803644 1871272 20991952 13374675 18116514 1114240 4868367 136811616 8405101 1278081 2767099 5212567 249287 537620
R 474567 383284 31441 95049 1470642 1859556 1763620 401260 2505952 1077049 893433 1756803 1410924 8405101 145984071 3166379 745417 179263 516555 4103701
S 24061883 1306048 297411 996601 4124890 31077799 2994709 5519761 3842873 10956077 5640570 8063096 5064821 1278081 3166379 223772717 42547765 7944686 114661 984066
T 22081233 2040361 2728911 273380 7912266 7893973 1061856 44208547 12006609 40428444 24572262 6391851 2988344 2767099 745417 42547765 170920503 19339350 182604 1150741
V 26185624 1630628 695137 492634 11594907 846186 164160 123668775 5883299 63982147 14206005 17589608 7882944 5212567 179263 7944686 19339350 165644211 294978 499026
W 114967 288704 685 2247 945094 739469 50384 582054 372773 1902599 126761 17454 160932 249287 516555 114661 182604 294978 161051187 649223
Y 1078222 132536 531816 221425 29717284 501146 7907701 1972605 1535116 5729381 1184931 434654 1006025 537620 4103701 984066 1150741 499026 649223 172734272

Number of Amino Acids in Alignment

  A C D E F G H I K L M N P Q R S T V W Y
A 78904 - - - - - - - - - - - - - - - - - - -
C - 2344 - - - - - - - - - - - - - - - - - -
D - - 5748 - - - - - - - - - - - - - - - - -
E - - - 21223 - - - - - - - - - - - - - - - -
F - - - - 76218 - - - - - - - - - - - - - - -
G - - - - - 49289 - - - - - - - - - - - - - -
H - - - - - - 27248 - - - - - - - - - - - - -
I - - - - - - - 112190 - - - - - - - - - - - -
K - - - - - - - - 32774 - - - - - - - - - - -
L - - - - - - - - - 176460 - - - - - - - - - -
M - - - - - - - - - - 26477 - - - - - - - - -
N - - - - - - - - - - - 31206 - - - - - - - -
P - - - - - - - - - - - - 104233 - - - - - - -
Q - - - - - - - - - - - - - 36571 - - - - - -
R - - - - - - - - - - - - - - 30697 - - - - -
S - - - - - - - - - - - - - - - 59578 - - - -
T - - - - - - - - - - - - - - - - 56605 - - -
V - - - - - - - - - - - - - - - - - 62745 - -
W - - - - - - - - - - - - - - - - - - 31367 -
Y - - - - - - - - - - - - - - - - - - - 38349

Percentage of Amino Acids in Alignment

  A C D E F G H I K L M N P Q R S T V W Y
A 7.44% - - - - - - - - - - - - - - - - - - -
C - 0.22% - - - - - - - - - - - - - - - - - -
D - - 0.54% - - - - - - - - - - - - - - - - -
E - - - 2.00% - - - - - - - - - - - - - - - -
F - - - - 7.18% - - - - - - - - - - - - - - -
G - - - - - 4.64% - - - - - - - - - - - - - -
H - - - - - - 2.57% - - - - - - - - - - - - -
I - - - - - - - 10.5% - - - - - - - - - - - -
K - - - - - - - - 3.09% - - - - - - - - - - -
L - - - - - - - - - 16.6% - - - - - - - - - -
M - - - - - - - - - - 2.49% - - - - - - - - -
N - - - - - - - - - - - 2.94% - - - - - - - -
P - - - - - - - - - - - - 9.83% - - - - - - -
Q - - - - - - - - - - - - - 3.44% - - - - - -
R - - - - - - - - - - - - - - 2.89% - - - - -
S - - - - - - - - - - - - - - - 5.61% - - - -
T - - - - - - - - - - - - - - - - 5.33% - - -
V - - - - - - - - - - - - - - - - - 5.91% - -
W - - - - - - - - - - - - - - - - - - 2.95% -
Y - - - - - - - - - - - - - - - - - - - 3.61%