7 transmembrane receptor (rhodopsin family)

Accession number: PF00001

Blosum Log2 No Clustering

  A C D E F G H I K L M N P Q R S T V W Y
A 3 0 -2 -1 -1 1 -1 -1 -1 0 -1 -2 -1 -1 -1 1 0 0 -2 -2
C 0 6 -3 -2 -1 -1 -2 -1 -3 -1 0 -2 -3 -3 -3 0 0 -1 -2 -3
D -2 -3 8 3 -2 -1 1 -3 0 -3 -2 2 -1 1 0 -1 -1 -3 -2 -1
E -1 -2 3 4 -2 1 1 -3 2 -2 -1 0 1 2 1 1 0 -2 -2 -1
F -1 -1 -2 -2 3 -1 0 0 -2 1 0 -2 -2 -1 -2 -1 0 0 0 1
G 1 -1 -1 1 -1 4 -1 -1 -1 -1 -1 -1 0 0 -1 1 0 -1 -1 -2
H -1 -2 1 1 0 -1 3 -2 2 -1 -1 2 -1 2 2 0 0 -1 -2 1
I -1 -1 -3 -3 0 -1 -2 3 -2 1 1 -3 -3 -2 -3 -1 -1 1 -2 -1
K -1 -3 0 2 -2 -1 2 -2 4 -2 -1 0 -1 3 4 0 0 -2 0 -1
L 0 -1 -3 -2 1 -1 -1 1 -2 2 1 -2 -2 -1 -2 -1 -1 1 -2 -1
M -1 0 -2 -1 0 -1 -1 1 -1 1 2 -2 -1 0 -1 -1 0 0 -1 -1
N -2 -2 2 0 -2 -1 2 -3 0 -2 -2 6 -2 0 0 1 0 -2 -2 -1
P -1 -3 -1 1 -2 0 -1 -3 -1 -2 -1 -2 7 0 -1 -1 -1 -2 -3 -3
Q -1 -3 1 2 -1 0 2 -2 3 -1 0 0 0 3 3 0 0 -1 0 -1
R -1 -3 0 1 -2 -1 2 -3 4 -2 -1 0 -1 3 5 0 0 -2 -1 -2
S 1 0 -1 1 -1 1 0 -1 0 -1 -1 1 -1 0 0 3 1 -1 -2 -1
T 0 0 -1 0 0 0 0 -1 0 -1 0 0 -1 0 0 1 2 0 -2 -1
V 0 -1 -3 -2 0 -1 -1 1 -2 1 0 -2 -2 -1 -2 -1 0 2 -2 -1
W -2 -2 -2 -2 0 -1 -2 -2 0 -2 -1 -2 -3 0 -1 -2 -2 -2 8 0
Y -2 -3 -1 -1 1 -2 1 -1 -1 -1 -1 -1 -3 -1 -2 -1 -1 -1 0 6

Blosum LN No Clustering

  A C D E F G H I K L M N P Q R S T V W Y
A 2 0 -2 -1 -1 0 -1 0 -1 0 0 -1 -1 -1 -1 1 0 0 -2 -1
C 0 4 -2 -2 0 -1 -1 -1 -2 -1 0 -2 -2 -2 -2 0 0 -1 -1 -2
D -2 -2 5 2 -1 -1 1 -2 0 -2 -1 1 0 1 0 -1 -1 -2 -1 -1
E -1 -2 2 3 -1 1 1 -2 1 -1 -1 0 1 1 1 1 0 -1 -2 -1
F -1 0 -1 -1 2 0 0 0 -1 0 0 -1 -1 -1 -2 -1 0 0 0 1
G 0 -1 -1 1 0 3 -1 -1 -1 0 0 -1 0 0 0 1 0 0 -1 -1
H -1 -1 1 1 0 -1 2 -1 1 -1 -1 2 0 1 1 0 0 -1 -1 0
I 0 -1 -2 -2 0 -1 -1 2 -2 1 1 -2 -2 -1 -2 -1 0 1 -2 -1
K -1 -2 0 1 -1 -1 1 -2 3 -1 -1 0 -1 2 2 0 0 -1 0 -1
L 0 -1 -2 -1 0 0 -1 1 -1 1 1 -2 -1 -1 -1 -1 0 0 -1 -1
M 0 0 -1 -1 0 0 -1 1 -1 1 2 -1 -1 0 -1 -1 0 0 -1 -1
N -1 -2 1 0 -1 -1 2 -2 0 -2 -1 4 -1 0 0 0 0 -2 -2 -1
P -1 -2 0 1 -1 0 0 -2 -1 -1 -1 -1 5 0 -1 -1 -1 -1 -2 -2
Q -1 -2 1 1 -1 0 1 -1 2 -1 0 0 0 2 2 0 0 -1 0 0
R -1 -2 0 1 -2 0 1 -2 2 -1 -1 0 -1 2 3 0 0 -1 -1 -1
S 1 0 -1 1 -1 1 0 -1 0 -1 -1 0 -1 0 0 2 0 -1 -1 -1
T 0 0 -1 0 0 0 0 0 0 0 0 0 -1 0 0 0 1 0 -2 0
V 0 -1 -2 -1 0 0 -1 1 -1 0 0 -2 -1 -1 -1 -1 0 1 -2 -1
W -2 -1 -1 -2 0 -1 -1 -2 0 -1 -1 -2 -2 0 -1 -1 -2 -2 6 0
Y -1 -2 -1 -1 1 -1 0 -1 -1 -1 -1 -1 -2 0 -1 -1 0 -1 0 4

Blosum Log10 No Clustering

  A C D E F G H I K L M N P Q R S T V W Y
A 1 0 -1 0 0 0 0 0 0 0 0 -1 0 0 0 0 0 0 -1 -1
C 0 2 -1 -1 0 0 -1 0 -1 0 0 -1 -1 -1 -1 0 0 0 -1 -1
D -1 -1 2 1 0 0 0 -1 0 -1 -1 0 0 0 0 0 0 -1 -1 0
E 0 -1 1 1 0 0 0 -1 1 -1 0 0 0 1 0 0 0 -1 -1 0
F 0 0 0 0 1 0 0 0 -1 0 0 0 -1 0 -1 0 0 0 0 0
G 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
H 0 -1 0 0 0 0 1 -1 1 0 0 1 0 1 1 0 0 0 -1 0
I 0 0 -1 -1 0 0 -1 1 -1 0 0 -1 -1 -1 -1 0 0 0 -1 0
K 0 -1 0 1 -1 0 1 -1 1 -1 0 0 0 1 1 0 0 -1 0 0
L 0 0 -1 -1 0 0 0 0 -1 1 0 -1 -1 0 -1 0 0 0 -1 0
M 0 0 -1 0 0 0 0 0 0 0 1 -1 0 0 0 0 0 0 0 0
N -1 -1 0 0 0 0 1 -1 0 -1 -1 2 -1 0 0 0 0 -1 -1 0
P 0 -1 0 0 -1 0 0 -1 0 -1 0 -1 2 0 0 0 0 -1 -1 -1
Q 0 -1 0 1 0 0 1 -1 1 0 0 0 0 1 1 0 0 0 0 0
R 0 -1 0 0 -1 0 1 -1 1 -1 0 0 0 1 1 0 0 -1 0 -1
S 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0
T 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 -1 0
V 0 0 -1 -1 0 0 0 0 -1 0 0 -1 -1 0 -1 0 0 1 -1 0
W -1 -1 -1 -1 0 0 -1 -1 0 -1 0 -1 -1 0 0 0 -1 -1 3 0
Y -1 -1 0 0 0 0 0 0 0 0 0 0 -1 0 -1 0 0 0 0 2

Distance Log2

  A C D E F G H I K L M N P Q R S T V W Y
A 5 7 8 8 6 6 8 6 7 5 7 7 7 8 7 5 6 5 8 7
C 7 5 10 10 7 8 10 7 9 6 8 9 9 10 9 7 7 7 9 9
D 8 10 6 7 8 8 9 9 8 8 9 7 8 9 8 8 8 8 10 8
E 8 10 7 8 8 8 9 8 7 7 9 8 8 8 8 7 8 8 10 9
F 6 7 8 8 5 7 8 5 8 5 7 7 8 8 8 6 6 5 7 6
G 6 8 8 8 7 6 9 7 8 6 8 8 7 8 7 6 7 6 9 8
H 8 10 9 9 8 9 9 8 8 7 9 7 9 8 7 7 8 8 10 8
I 6 7 9 8 5 7 8 5 8 4 6 8 8 8 7 6 6 4 8 7
K 7 9 8 7 8 8 8 8 7 7 8 8 8 7 6 7 7 7 8 8
L 5 6 8 7 5 6 7 4 7 4 5 7 7 7 6 5 5 4 7 6
M 7 8 9 9 7 8 9 6 8 5 8 9 8 9 8 7 7 6 9 8
N 7 9 7 8 7 8 7 8 8 7 9 5 8 8 7 6 7 7 9 8
P 7 9 8 8 8 7 9 8 8 7 8 8 5 8 8 7 7 7 10 9
Q 8 10 9 8 8 8 8 8 7 7 9 8 8 9 7 7 8 8 9 8
R 7 9 8 8 8 7 7 7 6 6 8 7 8 7 6 6 7 7 9 8
S 5 7 8 7 6 6 7 6 7 5 7 6 7 7 6 5 6 6 8 7
T 6 7 8 8 6 7 8 6 7 5 7 7 7 8 7 6 6 5 9 7
V 5 7 8 8 5 6 8 4 7 4 6 7 7 8 7 6 5 5 8 7
W 8 9 10 10 7 9 10 8 8 7 9 9 10 9 9 8 9 8 6 8
Y 7 9 8 9 6 8 8 7 8 6 8 8 9 8 8 7 7 7 8 5

Distance LN

  A C D E F G H I K L M N P Q R S T V W Y
A 3 4 5 5 4 4 5 4 5 3 4 5 5 5 4 3 4 3 5 5
C 4 3 6 6 5 5 6 4 6 4 5 6 6 6 6 4 4 4 6 6
D 5 6 4 5 5 6 6 6 5 5 6 5 6 6 5 5 5 5 7 6
E 5 6 5 5 5 5 6 6 5 5 6 5 5 5 5 5 5 5 7 6
F 4 5 5 5 3 4 5 3 5 3 5 5 5 5 5 4 4 3 5 4
G 4 5 6 5 4 4 6 4 5 4 5 5 5 6 5 4 4 4 6 5
H 5 6 6 6 5 6 6 5 5 5 6 5 6 6 5 5 5 5 7 5
I 4 4 6 6 3 4 5 3 5 3 4 5 5 5 5 4 4 3 5 4
K 5 6 5 5 5 5 5 5 4 4 6 5 5 5 4 4 5 5 6 5
L 3 4 5 5 3 4 5 3 4 2 3 4 4 5 4 3 3 2 5 4
M 4 5 6 6 5 5 6 4 6 3 5 6 5 6 5 5 4 4 6 5
N 5 6 5 5 5 5 5 5 5 4 6 3 6 5 5 4 4 5 6 5
P 5 6 6 5 5 5 6 5 5 4 5 6 3 6 5 5 5 5 6 6
Q 5 6 6 5 5 6 6 5 5 5 6 5 6 6 4 5 5 5 6 6
R 4 6 5 5 5 5 5 5 4 4 5 5 5 4 4 4 4 5 6 5
S 3 4 5 5 4 4 5 4 4 3 5 4 5 5 4 3 4 4 5 4
T 4 4 5 5 4 4 5 4 5 3 4 4 5 5 4 4 4 3 6 4
V 3 4 5 5 3 4 5 3 5 2 4 5 5 5 5 4 3 3 5 4
W 5 6 7 7 5 6 7 5 6 5 6 6 6 6 6 5 6 5 4 5
Y 5 6 6 6 4 5 5 4 5 4 5 5 6 6 5 4 4 4 5 3

Distance Log10

  A C D E F G H I K L M N P Q R S T V W Y
A 1 1 2 2 1 1 2 1 1 1 1 1 1 2 1 1 1 1 2 1
C 1 1 2 2 1 2 2 1 2 1 2 2 2 2 2 1 1 1 2 2
D 2 2 1 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2
E 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 2 2 2 2
F 1 1 2 2 1 1 2 1 2 1 1 2 2 2 2 1 1 1 2 1
G 1 2 2 2 1 1 2 1 2 1 2 2 2 2 2 1 1 1 2 2
H 2 2 2 2 2 2 2 2 2 1 2 2 2 2 1 2 2 2 2 2
I 1 1 2 2 1 1 2 1 2 1 1 2 2 2 2 1 1 1 2 1
K 1 2 2 2 2 2 2 2 1 1 2 2 2 1 1 1 1 1 2 2
L 1 1 2 2 1 1 1 1 1 0 1 1 1 1 1 1 1 0 2 1
M 1 2 2 2 1 2 2 1 2 1 2 2 2 2 2 1 1 1 2 2
N 1 2 2 2 2 2 2 2 2 1 2 1 2 2 1 1 1 2 2 2
P 1 2 2 2 2 2 2 2 2 1 2 2 1 2 2 1 1 1 2 2
Q 2 2 2 2 2 2 2 2 1 1 2 2 2 2 1 2 2 2 2 2
R 1 2 2 2 2 2 1 2 1 1 2 1 2 1 1 1 1 1 2 2
S 1 1 2 1 1 1 2 1 1 1 1 1 1 2 1 1 1 1 2 1
T 1 1 2 2 1 1 2 1 1 1 1 1 1 2 1 1 1 1 2 1
V 1 1 2 2 1 1 2 1 1 0 1 2 1 2 1 1 1 1 2 1
W 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 2
Y 1 2 2 2 1 2 2 1 2 1 2 2 2 2 2 1 1 1 2 1

Observed Probability of Transition

  A C D E F G H I K L M N P Q R S T V W Y
A 1.55963% 0.53932% 0.15767% 0.24153% 0.73694% 0.76768% 0.19929% 1.03055% 0.38750% 1.76101% 0.41113% 0.32434% 0.40674% 0.22940% 0.45337% 1.56674% 1.09914% 1.61379% 0.15893% 0.38394%
C 0.53932% 1.18823% 0.05750% 0.06838% 0.37976% 0.22459% 0.06859% 0.46174% 0.08574% 0.75932% 0.20661% 0.12463% 0.11355% 0.05709% 0.10916% 0.48955% 0.46299% 0.51214% 0.08636% 0.13551%
D 0.15767% 0.05750% 0.75534% 0.30908% 0.17817% 0.14283% 0.11794% 0.11961% 0.18298% 0.22815% 0.07235% 0.30573% 0.14534% 0.12442% 0.18737% 0.23714% 0.19281% 0.15056% 0.05228% 0.14764%
E 0.24153% 0.06838% 0.30908% 0.17294% 0.15935% 0.21706% 0.12108% 0.14366% 0.27917% 0.30531% 0.08845% 0.18590% 0.23986% 0.15726% 0.27395% 0.38708% 0.22794% 0.20807% 0.04161% 0.12798%
F 0.73694% 0.37976% 0.17817% 0.15935% 1.24720% 0.43100% 0.23860% 1.12486% 0.22543% 2.12488% 0.40381% 0.28607% 0.25011% 0.18340% 0.24550% 0.59662% 0.70306% 1.24281% 0.31556% 0.92055%
G 0.76768% 0.22459% 0.14283% 0.21706% 0.43100% 0.67692% 0.11313% 0.45149% 0.20724% 0.85844% 0.20326% 0.20870% 0.28733% 0.14492% 0.29130% 0.75074% 0.45630% 0.61711% 0.12672% 0.21142%
H 0.19929% 0.06859% 0.11794% 0.12108% 0.23860% 0.11313% 0.11543% 0.16771% 0.25178% 0.31870% 0.08344% 0.31263% 0.12150% 0.14868% 0.32434% 0.28210% 0.19929% 0.23128% 0.04600% 0.21393%
I 1.03055% 0.46174% 0.11961% 0.14366% 1.12486% 0.45149% 0.16771% 1.78673% 0.24718% 2.96681% 0.75053% 0.24279% 0.26495% 0.17921% 0.28524% 0.71519% 0.80930% 2.56216% 0.17043% 0.47157%
K 0.38750% 0.08574% 0.18298% 0.27917% 0.22543% 0.20724% 0.25178% 0.24718% 0.52698% 0.48077% 0.14366% 0.27311% 0.18381% 0.32853% 1.01005% 0.46466% 0.36199% 0.34379% 0.14303% 0.20243%
L 1.76101% 0.75932% 0.22815% 0.30531% 2.12488% 0.85844% 0.31870% 2.96681% 0.48077% 3.47205% 1.15309% 0.44543% 0.52573% 0.32832% 0.56044% 1.18363% 1.32855% 3.25080% 0.30866% 0.88312%
M 0.41113% 0.20661% 0.07235% 0.08845% 0.40381% 0.20326% 0.08344% 0.75053% 0.14366% 1.15309% 0.23087% 0.12923% 0.18340% 0.10707% 0.19343% 0.32476% 0.41197% 0.70829% 0.09933% 0.21100%
N 0.32434% 0.12463% 0.30573% 0.18590% 0.28607% 0.20870% 0.31263% 0.24279% 0.27311% 0.44543% 0.12923% 1.18070% 0.14534% 0.16353% 0.31995% 0.66354% 0.44835% 0.30573% 0.07821% 0.26684%
P 0.40674% 0.11355% 0.14534% 0.23986% 0.25011% 0.28733% 0.12150% 0.26495% 0.18381% 0.52573% 0.18340% 0.14534% 1.68552% 0.14492% 0.21602% 0.37934% 0.33124% 0.39147% 0.05562% 0.13362%
Q 0.22940% 0.05709% 0.12442% 0.15726% 0.18340% 0.14492% 0.14868% 0.17921% 0.32853% 0.32832% 0.10707% 0.16353% 0.14492% 0.09598% 0.42075% 0.31138% 0.24697% 0.24195% 0.10142% 0.14303%
R 0.45337% 0.10916% 0.18737% 0.27395% 0.24550% 0.29130% 0.32434% 0.28524% 1.01005% 0.56044% 0.19343% 0.31995% 0.21602% 0.42075% 1.03410% 0.57529% 0.45400% 0.40841% 0.13216% 0.22208%
S 1.56674% 0.48955% 0.23714% 0.38708% 0.59662% 0.75074% 0.28210% 0.71519% 0.46466% 1.18363% 0.32476% 0.66354% 0.37934% 0.31138% 0.57529% 1.14326% 1.01654% 0.96467% 0.18402% 0.43685%
T 1.09914% 0.46299% 0.19281% 0.22794% 0.70306% 0.45630% 0.19929% 0.80930% 0.36199% 1.32855% 0.41197% 0.44835% 0.33124% 0.24697% 0.45400% 1.01654% 0.71122% 1.13030% 0.12254% 0.44082%
V 1.61379% 0.51214% 0.15056% 0.20807% 1.24281% 0.61711% 0.23128% 2.56216% 0.34379% 3.25080% 0.70829% 0.30573% 0.39147% 0.24195% 0.40841% 0.96467% 1.13030% 1.76540% 0.19302% 0.53577%
W 0.15893% 0.08636% 0.05228% 0.04161% 0.31556% 0.12672% 0.04600% 0.17043% 0.14303% 0.30866% 0.09933% 0.07821% 0.05562% 0.10142% 0.13216% 0.18402% 0.12254% 0.19302% 0.94795% 0.20075%
Y 0.38394% 0.13551% 0.14764% 0.12798% 0.92055% 0.21142% 0.21393% 0.47157% 0.20243% 0.88312% 0.21100% 0.26684% 0.13362% 0.14303% 0.22208% 0.43685% 0.44082% 0.53577% 0.20075% 1.38668%

Expected Probability of Transition

  A C D E F G H I K L M N P Q R S T V W Y
A 0.60749% 0.57046% 0.36011% 0.32179% 1.03202% 0.62861% 0.29547% 1.30463% 0.53443% 2.08224% 0.49466% 0.59169% 0.61503% 0.30820% 0.68207% 1.07688% 0.92490% 1.49204% 0.35172% 0.70633%
C 0.57046% 0.13392% 0.16908% 0.15109% 0.48455% 0.29514% 0.13873% 0.61255% 0.25093% 0.97765% 0.23225% 0.27781% 0.28877% 0.14470% 0.32025% 0.50561% 0.43426% 0.70054% 0.16514% 0.33163%
D 0.36011% 0.16908% 0.05336% 0.09538% 0.30588% 0.18632% 0.08757% 0.38668% 0.15840% 0.61716% 0.14661% 0.17537% 0.18229% 0.09135% 0.20216% 0.31918% 0.27413% 0.44223% 0.10425% 0.20935%
E 0.32179% 0.15109% 0.09538% 0.04261% 0.27334% 0.16649% 0.07825% 0.34554% 0.14155% 0.55149% 0.13101% 0.15671% 0.16289% 0.08163% 0.18065% 0.28522% 0.24496% 0.39517% 0.09315% 0.18707%
F 1.03202% 0.48455% 0.30588% 0.27334% 0.43830% 0.53395% 0.25098% 1.10817% 0.45396% 1.76868% 0.42017% 0.50259% 0.52242% 0.26179% 0.57936% 0.91471% 0.78562% 1.26736% 0.29875% 0.59996%
G 0.62861% 0.29514% 0.18632% 0.16649% 0.53395% 0.16261% 0.15287% 0.67499% 0.27651% 1.07732% 0.25593% 0.30613% 0.31821% 0.15946% 0.35289% 0.55716% 0.47853% 0.77196% 0.18197% 0.36544%
H 0.29547% 0.13873% 0.08757% 0.07825% 0.25098% 0.15287% 0.03592% 0.31727% 0.12997% 0.50638% 0.12029% 0.14389% 0.14957% 0.07495% 0.16587% 0.26188% 0.22493% 0.36285% 0.08553% 0.17177%
I 1.30463% 0.61255% 0.38668% 0.34554% 1.10817% 0.67499% 0.31727% 0.70044% 0.57387% 2.23587% 0.53116% 0.63535% 0.66041% 0.33094% 0.73240% 1.15633% 0.99314% 1.60213% 0.37767% 0.75844%
K 0.53443% 0.25093% 0.15840% 0.14155% 0.45396% 0.27651% 0.12997% 0.57387% 0.11754% 0.91592% 0.21759% 0.26027% 0.27053% 0.13557% 0.30002% 0.47369% 0.40684% 0.65630% 0.15471% 0.31069%
L 2.08224% 0.97765% 0.61716% 0.55149% 1.76868% 1.07732% 0.50638% 2.23587% 0.91592% 1.78427% 0.84776% 1.01405% 1.05405% 0.52820% 1.16894% 1.84555% 1.58510% 2.55706% 0.60278% 1.21051%
M 0.49466% 0.23225% 0.14661% 0.13101% 0.42017% 0.25593% 0.12029% 0.53116% 0.21759% 0.84776% 0.10070% 0.24090% 0.25040% 0.12548% 0.27770% 0.43844% 0.37656% 0.60746% 0.14320% 0.28757%
N 0.59169% 0.27781% 0.17537% 0.15671% 0.50259% 0.30613% 0.14389% 0.63535% 0.26027% 1.01405% 0.24090% 0.14407% 0.29952% 0.15009% 0.33217% 0.52444% 0.45043% 0.72662% 0.17129% 0.34398%
P 0.61503% 0.28877% 0.18229% 0.16289% 0.52242% 0.31821% 0.14957% 0.66041% 0.27053% 1.05405% 0.25040% 0.29952% 0.15567% 0.15601% 0.34527% 0.54512% 0.46819% 0.75528% 0.17804% 0.35755%
Q 0.30820% 0.14470% 0.09135% 0.08163% 0.26179% 0.15946% 0.07495% 0.33094% 0.13557% 0.52820% 0.12548% 0.15009% 0.15601% 0.03909% 0.17302% 0.27317% 0.23462% 0.37848% 0.08922% 0.17917%
R 0.68207% 0.32025% 0.20216% 0.18065% 0.57936% 0.35289% 0.16587% 0.73240% 0.30002% 1.16894% 0.27770% 0.33217% 0.34527% 0.17302% 0.19145% 0.60454% 0.51923% 0.83761% 0.19745% 0.39652%
S 1.07688% 0.50561% 0.31918% 0.28522% 0.91471% 0.55716% 0.26188% 1.15633% 0.47369% 1.84555% 0.43844% 0.52444% 0.54512% 0.27317% 0.60454% 0.47723% 0.81977% 1.32244% 0.31174% 0.62604%
T 0.92490% 0.43426% 0.27413% 0.24496% 0.78562% 0.47853% 0.22493% 0.99314% 0.40684% 1.58510% 0.37656% 0.45043% 0.46819% 0.23462% 0.51923% 0.81977% 0.35204% 1.13581% 0.26774% 0.53769%
V 1.49204% 0.70054% 0.44223% 0.39517% 1.26736% 0.77196% 0.36285% 1.60213% 0.65630% 2.55706% 0.60746% 0.72662% 0.75528% 0.37848% 0.83761% 1.32244% 1.13581% 0.91613% 0.43192% 0.86739%
W 0.35172% 0.16514% 0.10425% 0.09315% 0.29875% 0.18197% 0.08553% 0.37767% 0.15471% 0.60278% 0.14320% 0.17129% 0.17804% 0.08922% 0.19745% 0.31174% 0.26774% 0.43192% 0.05091% 0.20447%
Y 0.70633% 0.33163% 0.20935% 0.18707% 0.59996% 0.36544% 0.17177% 0.75844% 0.31069% 1.21051% 0.28757% 0.34398% 0.35755% 0.17917% 0.39652% 0.62604% 0.53769% 0.86739% 0.20447% 0.20531%

Transition Count

  A C D E F G H I K L M N P Q R S T V W Y
A 7458 2579 754 1155 3524 3671 953 4928 1853 8421 1966 1551 1945 1097 2168 7492 5256 7717 760 1836
C 2579 5682 275 327 1816 1074 328 2208 410 3631 988 596 543 273 522 2341 2214 2449 413 648
D 754 275 3612 1478 852 683 564 572 875 1091 346 1462 695 595 896 1134 922 720 250 706
E 1155 327 1478 827 762 1038 579 687 1335 1460 423 889 1147 752 1310 1851 1090 995 199 612
F 3524 1816 852 762 5964 2061 1141 5379 1078 10161 1931 1368 1196 877 1174 2853 3362 5943 1509 4402
G 3671 1074 683 1038 2061 3237 541 2159 991 4105 972 998 1374 693 1393 3590 2182 2951 606 1011
H 953 328 564 579 1141 541 552 802 1204 1524 399 1495 581 711 1551 1349 953 1106 220 1023
I 4928 2208 572 687 5379 2159 802 8544 1182 14187 3589 1161 1267 857 1364 3420 3870 12252 815 2255
K 1853 410 875 1335 1078 991 1204 1182 2520 2299 687 1306 879 1571 4830 2222 1731 1644 684 968
L 8421 3631 1091 1460 10161 4105 1524 14187 2299 16603 5514 2130 2514 1570 2680 5660 6353 15545 1476 4223
M 1966 988 346 423 1931 972 399 3589 687 5514 1104 618 877 512 925 1553 1970 3387 475 1009
N 1551 596 1462 889 1368 998 1495 1161 1306 2130 618 5646 695 782 1530 3173 2144 1462 374 1276
P 1945 543 695 1147 1196 1374 581 1267 879 2514 877 695 8060 693 1033 1814 1584 1872 266 639
Q 1097 273 595 752 877 693 711 857 1571 1570 512 782 693 459 2012 1489 1181 1157 485 684
R 2168 522 896 1310 1174 1393 1551 1364 4830 2680 925 1530 1033 2012 4945 2751 2171 1953 632 1062
S 7492 2341 1134 1851 2853 3590 1349 3420 2222 5660 1553 3173 1814 1489 2751 5467 4861 4613 880 2089
T 5256 2214 922 1090 3362 2182 953 3870 1731 6353 1970 2144 1584 1181 2171 4861 3401 5405 586 2108
V 7717 2449 720 995 5943 2951 1106 12252 1644 15545 3387 1462 1872 1157 1953 4613 5405 8442 923 2562
W 760 413 250 199 1509 606 220 815 684 1476 475 374 266 485 632 880 586 923 4533 960
Y 1836 648 706 612 4402 1011 1023 2255 968 4223 1009 1276 639 684 1062 2089 2108 2562 960 6631

Number of Amino Acids in Alignment

  A C D E F G H I K L M N P Q R S T V W Y
A 1312 - - - - - - - - - - - - - - - - - - -
C - 600 - - - - - - - - - - - - - - - - - -
D - - 408 - - - - - - - - - - - - - - - - -
E - - - 415 - - - - - - - - - - - - - - - -
F - - - - 1059 - - - - - - - - - - - - - - -
G - - - - - 735 - - - - - - - - - - - - - -
H - - - - - - 340 - - - - - - - - - - - - -
I - - - - - - - 1340 - - - - - - - - - - - -
K - - - - - - - - 618 - - - - - - - - - - -
L - - - - - - - - - 2158 - - - - - - - - - -
M - - - - - - - - - - 520 - - - - - - - - -
N - - - - - - - - - - - 654 - - - - - - - -
P - - - - - - - - - - - - 711 - - - - - - -
Q - - - - - - - - - - - - - 367 - - - - - -
R - - - - - - - - - - - - - - 782 - - - - -
S - - - - - - - - - - - - - - - 1227 - - - -
T - - - - - - - - - - - - - - - - 1011 - - -
V - - - - - - - - - - - - - - - - - 1559 - -
W - - - - - - - - - - - - - - - - - - 370 -
Y - - - - - - - - - - - - - - - - - - - 733

Percentage of Amino Acids in Alignment

  A C D E F G H I K L M N P Q R S T V W Y
A 7.75% - - - - - - - - - - - - - - - - - - -
C - 3.54% - - - - - - - - - - - - - - - - - -
D - - 2.41% - - - - - - - - - - - - - - - - -
E - - - 2.45% - - - - - - - - - - - - - - - -
F - - - - 6.25% - - - - - - - - - - - - - - -
G - - - - - 4.34% - - - - - - - - - - - - - -
H - - - - - - 2.00% - - - - - - - - - - - - -
I - - - - - - - 7.92% - - - - - - - - - - - -
K - - - - - - - - 3.65% - - - - - - - - - - -
L - - - - - - - - - 12.7% - - - - - - - - - -
M - - - - - - - - - - 3.07% - - - - - - - - -
N - - - - - - - - - - - 3.86% - - - - - - - -
P - - - - - - - - - - - - 4.20% - - - - - - -
Q - - - - - - - - - - - - - 2.16% - - - - - -
R - - - - - - - - - - - - - - 4.62% - - - - -
S - - - - - - - - - - - - - - - 7.25% - - - -
T - - - - - - - - - - - - - - - - 5.97% - - -
V - - - - - - - - - - - - - - - - - 9.21% - -
W - - - - - - - - - - - - - - - - - - 2.18% -
Y - - - - - - - - - - - - - - - - - - - 4.33%