Blosum Log2 No Clustering

  A C D E F G H I K L M N P Q R S T V W Y
A 3 -5 0 0 -3 1 -4 0 0 -2 0 1 1 0 1 2 2 1 0 -2
C -5 6 -7 -8 -5 -7 -5 -7 -8 -7 -7 -6 -7 -6 -7 -6 -6 -7 -5 -5
D 0 -7 3 2 -4 3 -3 -1 -1 -2 -1 2 2 1 0 1 0 0 1 -1
E 0 -8 2 3 -4 1 -3 1 1 -1 1 1 2 1 0 0 0 2 0 -1
F -3 -5 -4 -4 6 -5 -4 -2 -4 0 -2 -4 -4 -4 -5 -3 -1 -2 -1 4
G 1 -7 3 1 -5 6 -4 -2 -1 -3 -1 1 2 -1 -1 1 0 -1 0 -3
H -4 -5 -3 -3 -4 -4 6 -5 -5 -5 -4 -3 -4 -3 -4 -4 -4 -4 -3 -1
I 0 -7 -1 1 -2 -2 -5 3 0 0 2 0 -2 1 1 0 2 2 0 -1
K 0 -8 -1 1 -4 -1 -5 0 3 -2 1 0 1 1 2 0 0 0 0 -1
L -2 -7 -2 -1 0 -3 -5 0 -2 6 2 -2 -2 0 -1 -2 -2 0 1 -1
M 0 -7 -1 1 -2 -1 -4 2 1 2 4 0 -1 3 1 -1 0 1 0 -1
N 1 -6 2 1 -4 1 -3 0 0 -2 0 2 2 1 1 1 1 0 0 -1
P 1 -7 2 2 -4 2 -4 -2 1 -2 -1 2 4 0 0 2 0 0 -1 -2
Q 0 -6 1 1 -4 -1 -3 1 1 0 3 1 0 3 1 0 0 1 1 -1
R 1 -7 0 0 -5 -1 -4 1 2 -1 1 1 0 1 3 0 1 0 1 -2
S 2 -6 1 0 -3 1 -4 0 0 -2 -1 1 2 0 0 3 1 0 1 -1
T 2 -6 0 0 -1 0 -4 2 0 -2 0 1 0 0 1 1 2 2 1 -2
V 1 -7 0 2 -2 -1 -4 2 0 0 1 0 0 1 0 0 2 2 0 -1
W 0 -5 1 0 -1 0 -3 0 0 1 0 0 -1 1 1 1 1 0 4 1
Y -2 -5 -1 -1 4 -3 -1 -1 -1 -1 -1 -1 -2 -1 -2 -1 -2 -1 1 6

Blosum LN No Clustering

  A C D E F G H I K L M N P Q R S T V W Y
A 2 -4 0 0 -2 0 -3 0 0 -1 0 1 1 0 1 1 1 1 0 -1
C -4 4 -5 -5 -3 -5 -4 -5 -5 -5 -5 -4 -5 -5 -5 -4 -4 -5 -4 -4
D 0 -5 2 1 -3 2 -2 -1 0 -2 -1 1 1 1 0 1 0 0 1 -1
E 0 -5 1 2 -2 1 -2 1 1 -1 1 1 1 1 0 0 0 1 0 -1
F -2 -3 -3 -2 4 -3 -3 -2 -3 0 -2 -3 -3 -3 -3 -2 -1 -2 -1 2
G 0 -5 2 1 -3 4 -3 -1 -1 -2 -1 1 1 0 -1 0 0 -1 0 -2
H -3 -4 -2 -2 -3 -3 4 -3 -3 -4 -3 -2 -3 -2 -3 -2 -3 -3 -2 -1
I 0 -5 -1 1 -2 -1 -3 2 0 0 1 0 -1 1 0 0 2 2 0 -1
K 0 -5 0 1 -3 -1 -3 0 2 -1 1 0 1 1 1 0 0 0 0 -1
L -1 -5 -2 -1 0 -2 -4 0 -1 4 1 -1 -2 0 0 -1 -1 0 1 0
M 0 -5 -1 1 -2 -1 -3 1 1 1 3 0 -1 2 1 -1 0 1 0 -1
N 1 -4 1 1 -3 1 -2 0 0 -1 0 2 1 0 0 1 1 0 0 -1
P 1 -5 1 1 -3 1 -3 -1 1 -2 -1 1 3 0 0 1 0 0 -1 -2
Q 0 -5 1 1 -3 0 -2 1 1 0 2 0 0 2 1 0 0 1 1 -1
R 1 -5 0 0 -3 -1 -3 0 1 0 1 0 0 1 2 0 0 0 1 -1
S 1 -4 1 0 -2 0 -2 0 0 -1 -1 1 1 0 0 2 1 0 1 -1
T 1 -4 0 0 -1 0 -3 2 0 -1 0 1 0 0 0 1 2 1 0 -1
V 1 -5 0 1 -2 -1 -3 2 0 0 1 0 0 1 0 0 1 1 0 -1
W 0 -4 1 0 -1 0 -2 0 0 1 0 0 -1 1 1 1 0 0 3 1
Y -1 -4 -1 -1 2 -2 -1 -1 -1 0 -1 -1 -2 -1 -1 -1 -1 -1 1 4

Blosum Log10 No Clustering

  A C D E F G H I K L M N P Q R S T V W Y
A 1 -2 0 0 -1 0 -1 0 0 -1 0 0 0 0 0 1 0 0 0 -1
C -2 2 -2 -2 -1 -2 -2 -2 -2 -2 -2 -2 -2 -2 -2 -2 -2 -2 -2 -2
D 0 -2 1 1 -1 1 -1 0 0 -1 0 1 1 0 0 0 0 0 0 0
E 0 -2 1 1 -1 0 -1 0 0 0 0 0 0 0 0 0 0 0 0 0
F -1 -1 -1 -1 2 -1 -1 -1 -1 0 -1 -1 -1 -1 -1 -1 0 -1 0 1
G 0 -2 1 0 -1 2 -1 -1 0 -1 0 0 1 0 0 0 0 0 0 -1
H -1 -2 -1 -1 -1 -1 2 -1 -1 -2 -1 -1 -1 -1 -1 -1 -1 -1 -1 0
I 0 -2 0 0 -1 -1 -1 1 0 0 1 0 -1 0 0 0 1 1 0 0
K 0 -2 0 0 -1 0 -1 0 1 0 0 0 0 0 0 0 0 0 0 0
L -1 -2 -1 0 0 -1 -2 0 0 2 1 -1 -1 0 0 -1 0 0 0 0
M 0 -2 0 0 -1 0 -1 1 0 1 1 0 0 1 0 0 0 0 0 0
N 0 -2 1 0 -1 0 -1 0 0 -1 0 1 1 0 0 0 0 0 0 0
P 0 -2 1 0 -1 1 -1 -1 0 -1 0 1 1 0 0 1 0 0 0 -1
Q 0 -2 0 0 -1 0 -1 0 0 0 1 0 0 1 0 0 0 0 0 0
R 0 -2 0 0 -1 0 -1 0 0 0 0 0 0 0 1 0 0 0 0 -1
S 1 -2 0 0 -1 0 -1 0 0 -1 0 0 1 0 0 1 0 0 0 0
T 0 -2 0 0 0 0 -1 1 0 0 0 0 0 0 0 0 1 0 0 -1
V 0 -2 0 0 -1 0 -1 1 0 0 0 0 0 0 0 0 0 1 0 0
W 0 -2 0 0 0 0 -1 0 0 0 0 0 0 0 0 0 0 0 1 0
Y -1 -2 0 0 1 -1 0 0 0 0 0 0 -1 0 -1 0 -1 0 0 2

Distance Log2

  A C D E F G H I K L M N P Q R S T V W Y
A 7 9 8 7 8 7 8 7 6 7 9 7 8 7 6 5 6 7 11 8
C 9 3 10 10 8 10 7 10 9 9 11 10 11 9 8 8 9 10 12 9
D 8 10 8 7 9 6 8 9 7 8 10 7 8 7 7 6 8 8 11 9
E 7 10 7 6 8 6 7 7 5 7 8 7 8 6 6 6 7 7 11 8
F 8 8 9 8 4 9 7 8 7 6 9 9 10 8 8 7 7 8 11 5
G 7 10 6 6 9 5 8 8 7 8 9 7 8 7 7 6 7 8 11 9
H 8 7 8 7 7 8 3 8 7 8 10 7 9 7 7 7 7 8 11 6
I 7 10 9 7 8 8 8 7 6 7 8 8 10 7 6 6 6 7 11 8
K 6 9 7 5 7 7 7 6 4 6 7 6 7 5 4 5 6 6 9 7
L 7 9 8 7 6 8 8 7 6 4 7 8 9 7 6 7 7 7 10 7
M 9 11 10 8 9 9 10 8 7 7 9 9 11 7 7 8 8 8 12 9
N 7 10 7 7 9 7 7 8 6 8 9 8 8 7 6 6 7 8 11 8
P 8 11 8 8 10 8 9 10 7 9 11 8 9 9 8 7 8 9 13 10
Q 7 9 7 6 8 7 7 7 5 7 7 7 9 6 6 6 7 7 10 8
R 6 8 7 6 8 7 7 6 4 6 7 6 8 6 5 5 6 6 9 7
S 5 8 6 6 7 6 7 6 5 7 8 6 7 6 5 5 5 7 9 7
T 6 9 8 7 7 7 7 6 6 7 8 7 8 7 6 5 7 7 10 8
V 7 10 8 7 8 8 8 7 6 7 8 8 9 7 6 7 7 8 11 8
W 11 12 11 11 11 11 11 11 9 10 12 11 13 10 9 9 10 11 13 10
Y 8 9 9 8 5 9 6 8 7 7 9 8 10 8 7 7 8 8 10 5

Distance LN

  A C D E F G H I K L M N P Q R S T V W Y
A 4 6 5 5 5 5 5 5 4 5 6 5 5 5 4 3 4 5 7 5
C 6 1 7 6 5 6 5 7 6 6 7 6 7 6 6 5 6 6 8 6
D 5 7 5 4 6 4 5 6 5 6 7 5 6 5 5 4 5 6 7 6
E 5 6 4 4 5 4 5 4 3 5 5 5 5 4 4 4 4 4 7 5
F 5 5 6 5 2 6 5 5 5 4 6 6 7 6 5 5 5 5 7 3
G 5 6 4 4 6 3 5 5 4 5 6 5 5 5 4 4 5 5 7 6
H 5 5 5 5 5 5 1 5 5 5 6 5 6 5 5 4 5 5 7 4
I 5 7 6 4 5 5 5 4 4 4 5 5 6 4 4 4 4 4 7 5
K 4 6 5 3 5 4 5 4 3 4 5 4 5 3 3 3 4 4 6 4
L 5 6 6 5 4 5 5 4 4 2 5 5 6 4 4 4 5 4 6 4
M 6 7 7 5 6 6 6 5 5 5 6 6 7 5 5 5 6 6 8 6
N 5 6 5 5 6 5 5 5 4 5 6 5 5 5 4 4 4 5 7 5
P 5 7 6 5 7 5 6 6 5 6 7 5 6 6 5 4 5 6 8 7
Q 5 6 5 4 6 5 5 4 3 4 5 5 6 4 4 4 4 4 6 5
R 4 6 5 4 5 4 5 4 3 4 5 4 5 4 3 3 4 4 6 5
S 3 5 4 4 5 4 4 4 3 4 5 4 4 4 3 3 3 4 6 5
T 4 6 5 4 5 5 5 4 4 5 6 4 5 4 4 3 4 4 7 5
V 5 6 6 4 5 5 5 4 4 4 6 5 6 4 4 4 4 5 7 5
W 7 8 7 7 7 7 7 7 6 6 8 7 8 6 6 6 7 7 9 7
Y 5 6 6 5 3 6 4 5 4 4 6 5 7 5 5 5 5 5 7 3

Distance Log10

  A C D E F G H I K L M N P Q R S T V W Y
A 1 2 2 1 2 1 2 2 1 2 2 1 2 1 1 1 1 1 3 2
C 2 0 2 2 2 2 1 2 2 2 3 2 3 2 2 2 2 2 3 2
D 2 2 2 1 2 1 2 2 1 2 2 2 2 2 2 1 2 2 3 2
E 1 2 1 1 2 1 1 1 1 1 2 1 2 1 1 1 1 1 3 2
F 2 2 2 2 1 2 1 2 2 1 2 2 2 2 2 1 1 2 3 1
G 1 2 1 1 2 1 2 2 1 2 2 1 2 2 1 1 1 2 3 2
H 2 1 2 1 1 2 0 2 1 2 2 2 2 1 1 1 2 2 3 1
I 2 2 2 1 2 2 2 1 1 1 2 2 2 1 1 1 1 1 3 2
K 1 2 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1
L 2 2 2 1 1 2 2 1 1 1 1 2 2 1 1 1 1 1 2 1
M 2 3 2 2 2 2 2 2 1 1 2 2 3 1 2 2 2 2 3 2
N 1 2 2 1 2 1 2 2 1 2 2 2 2 1 1 1 1 2 3 2
P 2 3 2 2 2 2 2 2 1 2 3 2 2 2 2 1 2 2 3 2
Q 1 2 2 1 2 2 1 1 1 1 1 1 2 1 1 1 1 1 2 2
R 1 2 2 1 2 1 1 1 1 1 2 1 2 1 1 1 1 1 2 2
S 1 2 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 2 1
T 1 2 2 1 1 1 2 1 1 1 2 1 2 1 1 1 1 1 2 2
V 1 2 2 1 2 2 2 1 1 1 2 2 2 1 1 1 1 2 3 2
W 3 3 3 3 3 3 3 3 2 2 3 3 3 2 2 2 2 3 3 2
Y 2 2 2 2 1 2 1 2 1 1 2 2 2 2 2 1 2 2 2 1

Observed Probability of Transition

  A C D E F G H I K L M N P Q R S T V W Y
A 0.44317% 0.11565% 0.20318% 0.39767% 0.17025% 0.40786% 0.23198% 0.30334% 0.82700% 0.28473% 0.10349% 0.34178% 0.15168% 0.37420% 0.77664% 1.16100% 0.65980% 0.35732% 0.02510% 0.16459%
C 0.11565% 8.65928% 0.04656% 0.06072% 0.21678% 0.06143% 0.32363% 0.05457% 0.12219% 0.09461% 0.02201% 0.06273% 0.02406% 0.09629% 0.14934% 0.21720% 0.11772% 0.05895% 0.01109% 0.11895%
D 0.20318% 0.04656% 0.15755% 0.43223% 0.07078% 0.58455% 0.20771% 0.13603% 0.35604% 0.14785% 0.04749% 0.28964% 0.14455% 0.29222% 0.31502% 0.62099% 0.27391% 0.14723% 0.02552% 0.12865%
E 0.39767% 0.06072% 0.43223% 0.65661% 0.16206% 0.58230% 0.33433% 0.48136% 1.12905% 0.40171% 0.18000% 0.37646% 0.23200% 0.74154% 0.67361% 0.71668% 0.46989% 0.50755% 0.02885% 0.25523%
F 0.17025% 0.21678% 0.07078% 0.16206% 3.13315% 0.10035% 0.33849% 0.18796% 0.27903% 0.75107% 0.07553% 0.09165% 0.03844% 0.14634% 0.17947% 0.38413% 0.34130% 0.15526% 0.03123% 1.66885%
G 0.40786% 0.06143% 0.58455% 0.58230% 0.10035% 1.37243% 0.21446% 0.15575% 0.46669% 0.19471% 0.07529% 0.40373% 0.24005% 0.31523% 0.41328% 0.84848% 0.36096% 0.18210% 0.02698% 0.11708%
H 0.23198% 0.32363% 0.20771% 0.33433% 0.33849% 0.21446% 8.53900% 0.16848% 0.38082% 0.22571% 0.06718% 0.28263% 0.08005% 0.33143% 0.35593% 0.51789% 0.27713% 0.16350% 0.03035% 0.64032%
I 0.30334% 0.05457% 0.13603% 0.48136% 0.18796% 0.15575% 0.16848% 0.43979% 0.70622% 0.45545% 0.18469% 0.23133% 0.05839% 0.49891% 0.66561% 0.59461% 0.79866% 0.50903% 0.02652% 0.20664%
K 0.82700% 0.12219% 0.35604% 1.12905% 0.27903% 0.46669% 0.38082% 0.70622% 2.57150% 0.70454% 0.33708% 0.60784% 0.38402% 1.11945% 2.36735% 1.33130% 0.90181% 0.65833% 0.07119% 0.48948%
L 0.28473% 0.09461% 0.14785% 0.40171% 0.75107% 0.19471% 0.22571% 0.45545% 0.70454% 3.05606% 0.33331% 0.22104% 0.08668% 0.54683% 0.80687% 0.48984% 0.36725% 0.41866% 0.06497% 0.45193%
M 0.10349% 0.02201% 0.04749% 0.18000% 0.07553% 0.07529% 0.06718% 0.18469% 0.33708% 0.33331% 0.07022% 0.07492% 0.03042% 0.32999% 0.28785% 0.16408% 0.13960% 0.14224% 0.01178% 0.07597%
N 0.34178% 0.06273% 0.28964% 0.37646% 0.09165% 0.40373% 0.28263% 0.23133% 0.60784% 0.22104% 0.07492% 0.21359% 0.17696% 0.36184% 0.56873% 0.79062% 0.45158% 0.20370% 0.02497% 0.16701%
P 0.15168% 0.02406% 0.14455% 0.23200% 0.03844% 0.24005% 0.08005% 0.05839% 0.38402% 0.08668% 0.03042% 0.17696% 0.09455% 0.12905% 0.20206% 0.41870% 0.15857% 0.07870% 0.00767% 0.05013%
Q 0.37420% 0.09629% 0.29222% 0.74154% 0.14634% 0.31523% 0.33143% 0.49891% 1.11945% 0.54683% 0.32999% 0.36184% 0.12905% 0.55707% 1.02763% 0.74778% 0.53242% 0.45846% 0.05739% 0.25592%
R 0.77664% 0.14934% 0.31502% 0.67361% 0.17947% 0.41328% 0.35593% 0.66561% 2.36735% 0.80687% 0.28785% 0.56873% 0.20206% 1.02763% 1.63189% 1.26910% 0.89165% 0.55788% 0.07493% 0.30137%
S 1.16100% 0.21720% 0.62099% 0.71668% 0.38413% 0.84848% 0.51789% 0.59461% 1.33130% 0.48984% 0.16408% 0.79062% 0.41870% 0.74778% 1.26910% 1.64508% 1.18663% 0.52540% 0.07950% 0.39433%
T 0.65980% 0.11772% 0.27391% 0.46989% 0.34130% 0.36096% 0.27713% 0.79866% 0.90181% 0.36725% 0.13960% 0.45158% 0.15857% 0.53242% 0.89165% 1.18663% 0.53121% 0.52852% 0.04208% 0.22192%
V 0.35732% 0.05895% 0.14723% 0.50755% 0.15526% 0.18210% 0.16350% 0.50903% 0.65833% 0.41866% 0.14224% 0.20370% 0.07870% 0.45846% 0.55788% 0.52540% 0.52852% 0.19729% 0.02405% 0.16991%
W 0.02510% 0.01109% 0.02552% 0.02885% 0.03123% 0.02698% 0.03035% 0.02652% 0.07119% 0.06497% 0.01178% 0.02497% 0.00767% 0.05739% 0.07493% 0.07950% 0.04208% 0.02405% 0.00464% 0.04868%
Y 0.16459% 0.11895% 0.12865% 0.25523% 1.66885% 0.11708% 0.64032% 0.20664% 0.48948% 0.45193% 0.07597% 0.16701% 0.05013% 0.25592% 0.30137% 0.39433% 0.22192% 0.16991% 0.04868% 1.17199%

Expected Probability of Transition

  A C D E F G H I K L M N P Q R S T V W Y
A 0.15775% 0.76629% 0.19006% 0.37639% 0.46293% 0.33745% 0.88374% 0.29007% 0.73012% 0.52269% 0.11214% 0.24452% 0.11444% 0.37641% 0.60166% 0.62550% 0.38860% 0.24790% 0.02868% 0.32851%
C 0.76629% 0.93056% 0.46162% 0.91416% 1.12434% 0.81959% 2.14637% 0.70451% 1.77328% 1.26948% 0.27236% 0.59388% 0.27795% 0.91422% 1.46127% 1.51919% 0.94381% 0.60208% 0.06967% 0.79786%
D 0.19006% 0.46162% 0.05724% 0.22674% 0.27887% 0.20328% 0.53237% 0.17474% 0.43983% 0.31487% 0.06755% 0.14730% 0.06894% 0.22675% 0.36244% 0.37681% 0.23409% 0.14933% 0.01728% 0.19789%
E 0.37639% 0.91416% 0.22674% 0.22451% 0.55226% 0.40257% 1.05427% 0.34604% 0.87101% 0.62355% 0.13378% 0.29171% 0.13652% 0.44905% 0.71776% 0.74621% 0.46359% 0.29573% 0.03422% 0.39190%
F 0.46293% 1.12434% 0.27887% 0.55226% 0.33961% 0.49513% 1.29666% 0.42560% 1.07127% 0.76692% 0.16454% 0.35877% 0.16791% 0.55229% 0.88278% 0.91777% 0.57017% 0.36373% 0.04208% 0.48200%
G 0.33745% 0.81959% 0.20328% 0.40257% 0.49513% 0.18046% 0.94521% 0.31025% 0.78091% 0.55905% 0.11994% 0.26153% 0.12240% 0.40260% 0.64351% 0.66901% 0.41563% 0.26514% 0.03068% 0.35136%
H 0.88374% 2.14637% 0.53237% 1.05427% 1.29666% 0.94521% 1.23767% 0.81248% 2.04506% 1.46405% 0.31411% 0.68490% 0.32055% 1.05434% 1.68524% 1.75203% 1.08846% 0.69436% 0.08034% 0.92015%
I 0.29007% 0.70451% 0.17474% 0.34604% 0.42560% 0.31025% 0.81248% 0.13334% 0.67125% 0.48055% 0.10310% 0.22481% 0.10521% 0.34606% 0.55315% 0.57507% 0.35727% 0.22791% 0.02637% 0.30202%
K 0.73012% 1.77328% 0.43983% 0.87101% 1.07127% 0.78091% 2.04506% 0.67125% 0.84479% 1.20956% 0.25951% 0.56585% 0.26483% 0.87107% 1.39230% 1.44748% 0.89926% 0.57366% 0.06638% 0.76021%
L 0.52269% 1.26948% 0.31487% 0.62355% 0.76692% 0.55905% 1.46405% 0.48055% 1.20956% 0.43296% 0.18578% 0.40509% 0.18959% 0.62359% 0.99674% 1.03625% 0.64378% 0.41068% 0.04752% 0.54423%
M 0.11214% 0.27236% 0.06755% 0.13378% 0.16454% 0.11994% 0.31411% 0.10310% 0.25951% 0.18578% 0.01993% 0.08691% 0.04067% 0.13379% 0.21385% 0.22232% 0.13812% 0.08811% 0.01019% 0.11676%
N 0.24452% 0.59388% 0.14730% 0.29171% 0.35877% 0.26153% 0.68490% 0.22481% 0.56585% 0.40509% 0.08691% 0.09475% 0.08869% 0.29172% 0.46629% 0.48477% 0.30117% 0.19212% 0.02223% 0.25460%
P 0.11444% 0.27795% 0.06894% 0.13652% 0.16791% 0.12240% 0.32055% 0.10521% 0.26483% 0.18959% 0.04067% 0.08869% 0.02075% 0.13653% 0.21823% 0.22688% 0.14095% 0.08992% 0.01040% 0.11915%
Q 0.37641% 0.91422% 0.22675% 0.44905% 0.55229% 0.40260% 1.05434% 0.34606% 0.87107% 0.62359% 0.13379% 0.29172% 0.13653% 0.22454% 0.71780% 0.74625% 0.46362% 0.29575% 0.03422% 0.39192%
R 0.60166% 1.46127% 0.36244% 0.71776% 0.88278% 0.64351% 1.68524% 0.55315% 1.39230% 0.99674% 0.21385% 0.46629% 0.21823% 0.71780% 0.57366% 1.19280% 0.74104% 0.47273% 0.05470% 0.62645%
S 0.62550% 1.51919% 0.37681% 0.74621% 0.91777% 0.66901% 1.75203% 0.57507% 1.44748% 1.03625% 0.22232% 0.48477% 0.22688% 0.74625% 1.19280% 0.62003% 0.77041% 0.49146% 0.05687% 0.65128%
T 0.38860% 0.94381% 0.23409% 0.46359% 0.57017% 0.41563% 1.08846% 0.35727% 0.89926% 0.64378% 0.13812% 0.30117% 0.14095% 0.46362% 0.74104% 0.77041% 0.23931% 0.30533% 0.03533% 0.40461%
V 0.24790% 0.60208% 0.14933% 0.29573% 0.36373% 0.26514% 0.69436% 0.22791% 0.57366% 0.41068% 0.08811% 0.19212% 0.08992% 0.29575% 0.47273% 0.49146% 0.30533% 0.09739% 0.02253% 0.25811%
W 0.02868% 0.06967% 0.01728% 0.03422% 0.04208% 0.03068% 0.08034% 0.02637% 0.06638% 0.04752% 0.01019% 0.02223% 0.01040% 0.03422% 0.05470% 0.05687% 0.03533% 0.02253% 0.00130% 0.02986%
Y 0.32851% 0.79786% 0.19789% 0.39190% 0.48200% 0.35136% 0.92015% 0.30202% 0.76021% 0.54423% 0.11676% 0.25460% 0.11915% 0.39192% 0.62645% 0.65128% 0.40461% 0.25811% 0.02986% 0.17102%

Transition Count

  A C D E F G H I K L M N P Q R S T V W Y
A 41230594 10760347 18903613 36998010 15840010 37945866 21582556 28221155 76940004 26490665 9628481 31797735 14112391 34813917 72254878 108013868 61385072 33243923 2335149 15312960
C 10760347 805614612 4332434 5649088 20168847 5715400 30109624 5077310 11368331 8802625 2048173 5836446 2238798 8959084 13894684 20207422 10952882 5484989 1032104 11066767
D 18903613 4332434 14658069 40213263 6585796 54384367 19324954 12655861 33124151 13755684 4418640 26947170 13448153 27186943 29307915 57774560 25483841 13697793 2374810 11968921
E 36998010 5649088 40213263 61087950 15077961 54175018 31104576 44783377 105041563 37373876 16746378 35024725 21584866 68989757 62669392 66676887 43716647 47220332 2684708 23745463
F 15840010 20168847 6585796 15077961 291492189 9336707 31491535 17486897 25959666 69876025 7027424 8527398 3576410 13615526 16697103 35737576 31753070 14444644 2905937 155261638
G 37945866 5715400 54384367 54175018 9336707 127684265 19953065 14490441 43418943 18114900 7004950 37561601 22333489 29327390 38449769 78938266 33582094 16942204 2510579 10893271
H 21582556 30109624 19324954 31104576 31491535 19953065 794425000 15674987 35429989 20999530 6250407 26294522 7447820 30834957 33113902 48182279 25783388 15211225 2823999 59572856
I 28221155 5077310 12655861 44783377 17486897 14490441 15674987 40916310 65703313 42372986 17183336 21522230 5432898 46416159 61925244 55320023 74303596 47358376 2467668 19225551
K 76940004 11368331 33124151 105041563 25959666 43418943 35429989 65703313 239239482 65546831 31360188 56551009 35727695 104148679 220246185 123858082 83900377 61247614 6623405 45538691
L 26490665 8802625 13755684 37373876 69876025 18114900 20999530 42372986 65546831 284320819 31010132 20565241 8064631 50874979 75067169 45572159 34167728 38950246 6045265 42045325
M 9628481 2048173 4418640 16746378 7027424 7004950 6250407 17183336 31360188 31010132 6533375 6970906 2830369 30701116 26780673 15265689 12988154 13233606 1096473 7068052
N 31797735 5836446 26947170 35024725 8527398 37561601 26294522 21522230 56551009 20565241 6970906 19871375 16463550 33664208 52912459 73555526 42012870 18951842 2323708 15538134
P 14112391 2238798 13448153 21584866 3576410 22333489 7447820 5432898 35727695 8064631 2830369 16463550 8796442 12006410 18799250 38954342 14753295 7322478 713924 4663914
Q 34813917 8959084 27186943 68989757 13615526 29327390 30834957 46416159 104148679 50874979 30701116 33664208 12006410 51827307 95605607 69569733 49533944 42653616 5339787 23809887
R 72254878 13894684 29307915 62669392 16697103 38449769 33113902 61925244 220246185 75067169 26780673 52912459 18799250 95605607 151822642 118070535 82955286 51902329 6971288 28037872
S 108013868 20207422 57774560 66676887 35737576 78938266 48182279 55320023 123858082 45572159 15265689 73555526 38954342 69569733 118070535 153049949 110398031 48880458 7396815 36686571
T 61385072 10952882 25483841 43716647 31753070 33582094 25783388 74303596 83900377 34167728 12988154 42012870 14753295 49533944 82955286 110398031 49421555 49171342 3915237 20646542
V 33243923 5484989 13697793 47220332 14444644 16942204 15211225 47358376 61247614 38950246 13233606 18951842 7322478 42653616 51902329 48880458 49171342 18355154 2237779 15808171
W 2335149 1032104 2374810 2684708 2905937 2510579 2823999 2467668 6623405 6045265 1096473 2323708 713924 5339787 6971288 7396815 3915237 2237779 431945 4529316
Y 15312960 11066767 11968921 23745463 155261638 10893271 59572856 19225551 45538691 42045325 7068052 15538134 4663914 23809887 28037872 36686571 20646542 15808171 4529316 109035943

Number of Amino Acids in Alignment

  A C D E F G H I K L M N P Q R S T V W Y
A 26557 - - - - - - - - - - - - - - - - - - -
C - 63252 - - - - - - - - - - - - - - - - - -
D - - 16106 - - - - - - - - - - - - - - - - -
E - - - 32106 - - - - - - - - - - - - - - - -
F - - - - 38674 - - - - - - - - - - - - - - -
G - - - - - 28250 - - - - - - - - - - - - - -
H - - - - - - 73071 - - - - - - - - - - - - -
I - - - - - - - 24321 - - - - - - - - - - - -
K - - - - - - - - 61106 - - - - - - - - - - -
L - - - - - - - - - 43414 - - - - - - - - - -
M - - - - - - - - - - 9471 - - - - - - - - -
N - - - - - - - - - - - 20466 - - - - - - - -
P - - - - - - - - - - - - 10066 - - - - - - -
Q - - - - - - - - - - - - - 31520 - - - - - -
R - - - - - - - - - - - - - - 50115 - - - - -
S - - - - - - - - - - - - - - - 52075 - - - -
T - - - - - - - - - - - - - - - - 32486 - - -
V - - - - - - - - - - - - - - - - - 21744 - -
W - - - - - - - - - - - - - - - - - - 2844 -
Y - - - - - - - - - - - - - - - - - - - 27584

Percentage of Amino Acids in Alignment

  A C D E F G H I K L M N P Q R S T V W Y
A 3.99% - - - - - - - - - - - - - - - - - - -
C - 9.50% - - - - - - - - - - - - - - - - - -
D - - 2.42% - - - - - - - - - - - - - - - - -
E - - - 4.82% - - - - - - - - - - - - - - - -
F - - - - 5.81% - - - - - - - - - - - - - - -
G - - - - - 4.24% - - - - - - - - - - - - - -
H - - - - - - 10.9% - - - - - - - - - - - - -
I - - - - - - - 3.65% - - - - - - - - - - - -
K - - - - - - - - 9.18% - - - - - - - - - - -
L - - - - - - - - - 6.52% - - - - - - - - - -
M - - - - - - - - - - 1.42% - - - - - - - - -
N - - - - - - - - - - - 3.07% - - - - - - - -
P - - - - - - - - - - - - 1.51% - - - - - - -
Q - - - - - - - - - - - - - 4.73% - - - - - -
R - - - - - - - - - - - - - - 7.53% - - - - -
S - - - - - - - - - - - - - - - 7.82% - - - -
T - - - - - - - - - - - - - - - - 4.88% - - -
V - - - - - - - - - - - - - - - - - 3.26% - -
W - - - - - - - - - - - - - - - - - - 0.42% -
Y - - - - - - - - - - - - - - - - - - - 4.14%