ABC Transporter

Blosum Log2 No Clustering

  A C D E F G H I K L M N P Q R S T V W Y
A 3 3 -1 0 -1 -1 -1 -1 -1 -1 0 0 0 -1 -1 1 0 0 0 -1
C 3 5 -3 -3 0 -2 -2 0 -1 0 1 -2 -2 -2 -1 1 0 1 -1 -1
D -1 -3 5 1 -2 -2 1 -4 0 -4 -3 1 -1 0 0 0 -1 -4 -1 -1
E 0 -3 1 4 -1 -2 0 -3 1 -3 -1 1 -1 2 0 0 -1 -3 0 0
F -1 0 -2 -1 4 -3 -1 1 -2 1 1 -1 0 -2 -2 -1 0 1 1 2
G -1 -2 -2 -2 -3 5 -2 -5 -2 -5 -4 0 -1 -2 -2 -1 -3 -4 -3 -3
H -1 -2 1 0 -1 -2 7 -3 0 -2 -2 1 -1 0 0 0 -1 -2 0 0
I -1 0 -4 -3 1 -5 -3 3 -3 2 1 -3 -2 -3 -2 -3 -1 3 0 0
K -1 -1 0 1 -2 -2 0 -3 4 -3 -1 1 -1 1 2 -1 -1 -3 0 0
L -1 0 -4 -3 1 -5 -2 2 -3 3 2 -3 -3 -3 -2 -3 -2 1 0 1
M 0 1 -3 -1 1 -4 -2 1 -1 2 3 -2 -2 0 -1 -2 -1 1 1 1
N 0 -2 1 1 -1 0 1 -3 1 -3 -2 4 -1 1 0 1 0 -3 0 0
P 0 -2 -1 -1 0 -1 -1 -2 -1 -3 -2 -1 7 -2 -1 0 -1 -1 -1 0
Q -1 -2 0 2 -2 -2 0 -3 1 -3 0 1 -2 5 1 -1 -1 -3 1 -1
R -1 -1 0 0 -2 -2 0 -2 2 -2 -1 0 -1 1 4 -1 -1 -2 1 0
S 1 1 0 0 -1 -1 0 -3 -1 -3 -2 1 0 -1 -1 4 2 -2 -1 -1
T 0 0 -1 -1 0 -3 -1 -1 -1 -2 -1 0 -1 -1 -1 2 5 -1 -1 -1
V 0 1 -4 -3 1 -4 -2 3 -3 1 1 -3 -1 -3 -2 -2 -1 3 0 0
W 0 -1 -1 0 1 -3 0 0 0 0 1 0 -1 1 1 -1 -1 0 4 2
Y -1 -1 -1 0 2 -3 0 0 0 1 1 0 0 -1 0 -1 -1 0 2 4

Blosum LN No Clustering

  A C D E F G H I K L M N P Q R S T V W Y
A 2 2 -1 0 -1 0 -1 -1 0 -1 0 0 0 -1 0 0 0 0 0 0
C 2 4 -2 -2 0 -1 -1 0 -1 0 1 -1 -1 -2 -1 1 0 1 0 0
D -1 -2 4 1 -1 -1 0 -3 0 -2 -2 1 -1 0 0 0 -1 -2 -1 0
E 0 -2 1 3 -1 -1 0 -2 1 -2 -1 0 -1 1 0 0 0 -2 0 0
F -1 0 -1 -1 3 -2 -1 1 -1 1 1 -1 0 -1 -1 -1 0 0 1 1
G 0 -1 -1 -1 -2 4 -1 -3 -1 -3 -2 0 -1 -2 -1 -1 -2 -3 -2 -2
H -1 -1 0 0 -1 -1 5 -2 0 -2 -1 1 -1 0 0 0 -1 -1 0 0
I -1 0 -3 -2 1 -3 -2 2 -2 1 1 -2 -2 -2 -2 -2 -1 2 0 0
K 0 -1 0 1 -1 -1 0 -2 3 -2 -1 0 -1 1 1 0 -1 -2 0 0
L -1 0 -2 -2 1 -3 -2 1 -2 2 1 -2 -2 -2 -1 -2 -1 1 0 0
M 0 1 -2 -1 1 -2 -1 1 -1 1 2 -1 -2 0 0 -1 -1 1 1 1
N 0 -1 1 0 -1 0 1 -2 0 -2 -1 3 -1 0 0 1 0 -2 0 0
P 0 -1 -1 -1 0 -1 -1 -2 -1 -2 -2 -1 5 -1 -1 0 -1 -1 -1 0
Q -1 -2 0 1 -1 -2 0 -2 1 -2 0 0 -1 4 1 -1 -1 -2 0 -1
R 0 -1 0 0 -1 -1 0 -2 1 -1 0 0 -1 1 3 -1 -1 -2 1 0
S 0 1 0 0 -1 -1 0 -2 0 -2 -1 1 0 -1 -1 3 1 -2 -1 -1
T 0 0 -1 0 0 -2 -1 -1 -1 -1 -1 0 -1 -1 -1 1 3 -1 -1 -1
V 0 1 -2 -2 0 -3 -1 2 -2 1 1 -2 -1 -2 -2 -2 -1 2 0 0
W 0 0 -1 0 1 -2 0 0 0 0 1 0 -1 0 1 -1 -1 0 3 1
Y 0 0 0 0 1 -2 0 0 0 0 1 0 0 -1 0 -1 -1 0 1 3

Blosum Log10 No Clustering

  A C D E F G H I K L M N P Q R S T V W Y
A 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
C 1 2 -1 -1 0 -1 -1 0 0 0 0 0 -1 -1 0 0 0 0 0 0
D 0 -1 2 0 -1 0 0 -1 0 -1 -1 0 0 0 0 0 0 -1 0 0
E 0 -1 0 1 0 -1 0 -1 0 -1 0 0 0 0 0 0 0 -1 0 0
F 0 0 -1 0 1 -1 0 0 -1 0 0 0 0 -1 0 0 0 0 0 1
G 0 -1 0 -1 -1 2 0 -2 0 -1 -1 0 0 -1 0 0 -1 -1 -1 -1
H 0 -1 0 0 0 0 2 -1 0 -1 -1 0 0 0 0 0 0 -1 0 0
I 0 0 -1 -1 0 -2 -1 1 -1 1 0 -1 -1 -1 -1 -1 0 1 0 0
K 0 0 0 0 -1 0 0 -1 1 -1 0 0 0 0 1 0 0 -1 0 0
L 0 0 -1 -1 0 -1 -1 1 -1 1 1 -1 -1 -1 -1 -1 0 0 0 0
M 0 0 -1 0 0 -1 -1 0 0 1 1 0 -1 0 0 -1 0 0 0 0
N 0 0 0 0 0 0 0 -1 0 -1 0 1 0 0 0 0 0 -1 0 0
P 0 -1 0 0 0 0 0 -1 0 -1 -1 0 2 -1 0 0 0 0 0 0
Q 0 -1 0 0 -1 -1 0 -1 0 -1 0 0 -1 2 0 0 0 -1 0 0
R 0 0 0 0 0 0 0 -1 1 -1 0 0 0 0 1 0 0 -1 0 0
S 0 0 0 0 0 0 0 -1 0 -1 -1 0 0 0 0 1 1 -1 0 0
T 0 0 0 0 0 -1 0 0 0 0 0 0 0 0 0 1 1 0 0 0
V 0 0 -1 -1 0 -1 -1 1 -1 0 0 -1 0 -1 -1 -1 0 1 0 0
W 0 0 0 0 0 -1 0 0 0 0 0 0 0 0 0 0 0 0 1 1
Y 0 0 0 0 1 -1 0 0 0 0 0 0 0 0 0 0 0 0 1 1

Distance Log2

  A C D E F G H I K L M N P Q R S T V W Y
A 5 7 7 6 7 6 8 6 6 5 7 7 6 7 6 5 6 6 9 8
C 7 10 11 10 10 9 11 9 10 8 10 11 11 11 9 8 9 8 13 11
D 7 11 5 6 8 6 7 8 6 7 9 6 7 7 6 6 7 8 10 8
E 6 10 6 5 8 7 7 7 6 6 8 7 7 6 6 6 7 7 9 8
F 7 10 8 8 7 8 9 6 8 5 8 9 8 9 8 8 8 7 10 8
G 6 9 6 7 8 3 8 8 7 7 9 7 7 7 6 6 7 7 10 9
H 8 11 7 7 9 8 6 9 8 8 10 8 9 8 7 8 8 8 11 9
I 6 9 8 7 6 8 9 5 8 4 6 8 8 8 7 7 7 4 9 7
K 6 10 6 6 8 7 8 8 6 7 8 7 8 6 5 7 7 8 10 8
L 5 8 7 6 5 7 8 4 7 3 5 7 7 7 6 7 6 4 8 6
M 7 10 9 8 8 9 10 6 8 5 8 9 9 8 7 8 8 7 10 8
N 7 11 6 7 9 7 8 8 7 7 9 7 8 7 7 6 7 8 11 9
P 6 11 7 7 8 7 9 8 8 7 9 8 5 8 7 7 8 7 11 9
Q 7 11 7 6 9 7 8 8 6 7 8 7 8 6 6 7 7 8 10 9
R 6 9 6 6 8 6 7 7 5 6 7 7 7 6 5 6 7 7 9 8
S 5 8 6 6 8 6 8 7 7 7 8 6 7 7 6 5 5 7 10 8
T 6 9 7 7 8 7 8 7 7 6 8 7 8 7 7 5 5 6 10 9
V 6 8 8 7 7 7 8 4 8 4 7 8 7 8 7 7 6 5 9 7
W 9 13 10 9 10 10 11 9 10 8 10 11 11 10 9 10 10 9 12 10
Y 8 11 8 8 8 9 9 7 8 6 8 9 9 9 8 8 9 7 10 8

Distance LN

  A C D E F G H I K L M N P Q R S T V W Y
A 3 5 4 4 5 4 5 4 4 3 5 4 4 4 4 3 4 4 6 5
C 5 7 7 7 7 6 8 6 7 5 6 7 7 7 6 5 6 5 9 7
D 4 7 3 4 5 4 5 5 4 4 6 4 5 4 4 4 4 5 7 5
E 4 7 4 3 5 4 5 5 4 4 5 4 5 4 4 4 4 5 6 5
F 5 7 5 5 5 5 6 4 6 3 5 6 5 6 5 5 5 4 7 5
G 4 6 4 4 5 2 5 5 4 4 6 4 5 5 4 4 5 5 7 6
H 5 8 5 5 6 5 4 6 5 5 6 5 6 5 5 5 5 6 7 6
I 4 6 5 5 4 5 6 3 5 2 4 5 5 5 4 5 4 3 6 5
K 4 7 4 4 6 4 5 5 4 4 5 5 5 4 3 4 5 5 7 5
L 3 5 4 4 3 4 5 2 4 2 3 5 5 4 4 4 4 3 6 4
M 5 6 6 5 5 6 6 4 5 3 5 6 6 5 5 5 5 4 7 5
N 4 7 4 4 6 4 5 5 5 5 6 4 5 5 4 4 5 5 7 6
P 4 7 5 5 5 5 6 5 5 5 6 5 3 6 5 5 5 5 7 6
Q 4 7 4 4 6 5 5 5 4 4 5 5 6 4 4 5 5 5 6 6
R 4 6 4 4 5 4 5 4 3 4 5 4 5 4 3 4 4 4 6 5
S 3 5 4 4 5 4 5 5 4 4 5 4 5 5 4 3 3 5 7 6
T 4 6 4 4 5 5 5 4 5 4 5 5 5 5 4 3 3 4 7 6
V 4 5 5 5 4 5 6 3 5 3 4 5 5 5 4 5 4 3 6 5
W 6 9 7 6 7 7 7 6 7 6 7 7 7 6 6 7 7 6 8 7
Y 5 7 5 5 5 6 6 5 5 4 5 6 6 6 5 6 6 5 7 6

Distance Log10

  A C D E F G H I K L M N P Q R S T V W Y
A 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 2 2
C 1 2 2 2 2 2 3 2 2 2 2 2 3 2 2 2 2 2 3 3
D 1 2 1 1 2 1 2 2 1 1 2 1 2 1 1 1 1 2 2 2
E 1 2 1 1 2 1 2 2 1 1 2 1 2 1 1 1 1 1 2 2
F 1 2 2 2 1 2 2 1 2 1 2 2 2 2 2 2 2 1 2 2
G 1 2 1 1 2 0 2 2 1 1 2 1 1 1 1 1 1 1 2 2
H 2 3 2 2 2 2 1 2 2 2 2 2 2 2 2 2 2 2 3 2
I 1 2 2 2 1 2 2 1 2 0 1 2 2 2 1 2 1 1 2 2
K 1 2 1 1 2 1 2 2 1 1 2 1 2 1 1 1 1 2 2 2
L 1 2 1 1 1 1 2 0 1 0 1 1 1 1 1 1 1 1 2 1
M 1 2 2 2 2 2 2 1 2 1 2 2 2 2 2 2 2 1 2 2
N 1 2 1 1 2 1 2 2 1 1 2 1 2 1 1 1 1 2 3 2
P 1 3 2 2 2 1 2 2 2 1 2 2 1 2 2 1 2 2 3 2
Q 1 2 1 1 2 1 2 2 1 1 2 1 2 1 1 1 2 2 2 2
R 1 2 1 1 2 1 2 1 1 1 2 1 2 1 1 1 1 1 2 2
S 1 2 1 1 2 1 2 2 1 1 2 1 1 1 1 1 1 1 2 2
T 1 2 1 1 2 1 2 1 1 1 2 1 2 2 1 1 1 1 2 2
V 1 2 2 1 1 1 2 1 2 1 1 2 2 2 1 1 1 1 2 2
W 2 3 2 2 2 2 3 2 2 2 2 3 3 2 2 2 2 2 3 2
Y 2 3 2 2 2 2 2 2 2 1 2 2 2 2 2 2 2 2 2 2

Observed Probability of Transition

  A C D E F G H I K L M N P Q R S T V W Y
A 1.75504% 0.31913% 0.52947% 0.84026% 0.34697% 1.07824% 0.25021% 0.82687% 0.59203% 1.45316% 0.37251% 0.43448% 0.62112% 0.48354% 0.76938% 1.11959% 0.75170% 1.06702% 0.09089% 0.24407%
C 0.31913% 0.04671% 0.03260% 0.04115% 0.05251% 0.07758% 0.01800% 0.12868% 0.05192% 0.21249% 0.05900% 0.03166% 0.02840% 0.03254% 0.07464% 0.15428% 0.07934% 0.15353% 0.00699% 0.02489%
D 0.52947% 0.03260% 1.88979% 1.08010% 0.17128% 0.56256% 0.28791% 0.19661% 0.60720% 0.41474% 0.10697% 0.58411% 0.28279% 0.46655% 0.65889% 0.56963% 0.44058% 0.23154% 0.04022% 0.17476%
E 0.84026% 0.04115% 1.08010% 1.55283% 0.24453% 0.54001% 0.28274% 0.29768% 0.85608% 0.66630% 0.21332% 0.49887% 0.30512% 0.94912% 0.90269% 0.69466% 0.55052% 0.36840% 0.07330% 0.21746%
F 0.34697% 0.05251% 0.17128% 0.24453% 0.32788% 0.17374% 0.08998% 0.58167% 0.14942% 1.27769% 0.24502% 0.11949% 0.21774% 0.13626% 0.21722% 0.21942% 0.27275% 0.54745% 0.04768% 0.23847%
G 1.07824% 0.07758% 0.56256% 0.54001% 0.17374% 5.04089% 0.22062% 0.22058% 0.48784% 0.46108% 0.13648% 0.50747% 0.39926% 0.33524% 0.63544% 0.62283% 0.36919% 0.33947% 0.03641% 0.13292%
H 0.25021% 0.01800% 0.28791% 0.28274% 0.08998% 0.22062% 0.55370% 0.11818% 0.22006% 0.23609% 0.06142% 0.19151% 0.10165% 0.21460% 0.28247% 0.22180% 0.15332% 0.14635% 0.02349% 0.08431%
I 0.82687% 0.12868% 0.19661% 0.29768% 0.58167% 0.22058% 0.11818% 1.60507% 0.25220% 3.44631% 0.59435% 0.15951% 0.21471% 0.20452% 0.41213% 0.31492% 0.48014% 2.46485% 0.07174% 0.28401%
K 0.59203% 0.05192% 0.60720% 0.85608% 0.14942% 0.48784% 0.22006% 0.25220% 1.00192% 0.51189% 0.15690% 0.39371% 0.24222% 0.62964% 1.20889% 0.47618% 0.35407% 0.27394% 0.05150% 0.16274%
L 1.45316% 0.21249% 0.41474% 0.66630% 1.27769% 0.46108% 0.23609% 3.44631% 0.51189% 4.42605% 1.22836% 0.31905% 0.34787% 0.45688% 0.86784% 0.53959% 0.79794% 2.61604% 0.14593% 0.58034%
M 0.37251% 0.05900% 0.10697% 0.21332% 0.24502% 0.13648% 0.06142% 0.59435% 0.15690% 1.22836% 0.21757% 0.10015% 0.07840% 0.22448% 0.27762% 0.15300% 0.18399% 0.49554% 0.03538% 0.15830%
N 0.43448% 0.03166% 0.58411% 0.49887% 0.11949% 0.50747% 0.19151% 0.15951% 0.39371% 0.31905% 0.10015% 0.47636% 0.16505% 0.34164% 0.44505% 0.63207% 0.32987% 0.19460% 0.02985% 0.11717%
P 0.62112% 0.02840% 0.28279% 0.30512% 0.21774% 0.39926% 0.10165% 0.21471% 0.24222% 0.34787% 0.07840% 0.16505% 1.14283% 0.14530% 0.28717% 0.37023% 0.23062% 0.28926% 0.02477% 0.12945%
Q 0.48354% 0.03254% 0.46655% 0.94912% 0.13626% 0.33524% 0.21460% 0.20452% 0.62964% 0.45688% 0.22448% 0.34164% 0.14530% 1.10217% 0.78150% 0.36839% 0.28404% 0.22928% 0.05630% 0.12088%
R 0.76938% 0.07464% 0.65889% 0.90269% 0.21722% 0.63544% 0.28247% 0.41213% 1.20889% 0.86784% 0.27762% 0.44505% 0.28717% 0.78150% 1.44335% 0.55328% 0.42054% 0.41635% 0.08646% 0.24681%
S 1.11959% 0.15428% 0.56963% 0.69466% 0.21942% 0.62283% 0.22180% 0.31492% 0.47618% 0.53959% 0.15300% 0.63207% 0.37023% 0.36839% 0.55328% 1.52520% 1.27757% 0.39262% 0.04238% 0.14848%
T 0.75170% 0.07934% 0.44058% 0.55052% 0.27275% 0.36919% 0.15332% 0.48014% 0.35407% 0.79794% 0.18399% 0.32987% 0.23062% 0.28404% 0.42054% 1.27757% 1.44418% 0.57729% 0.03615% 0.13685%
V 1.06702% 0.15353% 0.23154% 0.36840% 0.54745% 0.33947% 0.14635% 2.46485% 0.27394% 2.61604% 0.49554% 0.19460% 0.28926% 0.22928% 0.41635% 0.39262% 0.57729% 1.54915% 0.07040% 0.28157%
W 0.09089% 0.00699% 0.04022% 0.07330% 0.04768% 0.03641% 0.02349% 0.07174% 0.05150% 0.14593% 0.03538% 0.02985% 0.02477% 0.05630% 0.08646% 0.04238% 0.03615% 0.07040% 0.00977% 0.03906%
Y 0.24407% 0.02489% 0.17476% 0.21746% 0.23847% 0.13292% 0.08431% 0.28401% 0.16274% 0.58034% 0.15830% 0.11717% 0.12945% 0.12088% 0.24681% 0.14848% 0.13685% 0.28157% 0.03906% 0.14043%

Expected Probability of Transition

  A C D E F G H I K L M N P Q R S T V W Y
A 0.61628% 0.13132% 0.88067% 0.99920% 0.47142% 1.36745% 0.33852% 1.13673% 0.76010% 1.99649% 0.41736% 0.51405% 0.53122% 0.68024% 0.97589% 0.93587% 0.83331% 1.11898% 0.08074% 0.29858%
C 0.13132% 0.00699% 0.09383% 0.10645% 0.05022% 0.14569% 0.03606% 0.12111% 0.08098% 0.21271% 0.04446% 0.05476% 0.05659% 0.07247% 0.10397% 0.09971% 0.08878% 0.11922% 0.00860% 0.03181%
D 0.88067% 0.09383% 0.31462% 0.71393% 0.33683% 0.97704% 0.24187% 0.81219% 0.54309% 1.42649% 0.29820% 0.36729% 0.37956% 0.48603% 0.69727% 0.66868% 0.59540% 0.79951% 0.05769% 0.21334%
E 0.99920% 0.10645% 0.71393% 0.40500% 0.38216% 1.10854% 0.27442% 0.92150% 0.61618% 1.61848% 0.33833% 0.41672% 0.43064% 0.55145% 0.79112% 0.75868% 0.67553% 0.90712% 0.06545% 0.24205%
F 0.47142% 0.05022% 0.33683% 0.38216% 0.09015% 0.52301% 0.12947% 0.43477% 0.29072% 0.76360% 0.15963% 0.19661% 0.20318% 0.26017% 0.37325% 0.35794% 0.31872% 0.42798% 0.03088% 0.11420%
G 1.36745% 0.14569% 0.97704% 1.10854% 0.52301% 0.75854% 0.37556% 1.26111% 0.84327% 2.21496% 0.46303% 0.57030% 0.58935% 0.75468% 1.08268% 1.03828% 0.92450% 1.24143% 0.08957% 0.33126%
H 0.33852% 0.03606% 0.24187% 0.27442% 0.12947% 0.37556% 0.04648% 0.31220% 0.20876% 0.54833% 0.11462% 0.14118% 0.14590% 0.18682% 0.26802% 0.25703% 0.22886% 0.30732% 0.02217% 0.08200%
I 1.13673% 0.12111% 0.81219% 0.92150% 0.43477% 1.26111% 0.31220% 0.52416% 0.70099% 1.84124% 0.38490% 0.47408% 0.48991% 0.62735% 0.90000% 0.86310% 0.76851% 1.03197% 0.07446% 0.27536%
K 0.76010% 0.08098% 0.54309% 0.61618% 0.29072% 0.84327% 0.20876% 0.70099% 0.23437% 1.23119% 0.25737% 0.31700% 0.32759% 0.41949% 0.60181% 0.57713% 0.51388% 0.69005% 0.04979% 0.18413%
L 1.99649% 0.21271% 1.42649% 1.61848% 0.76360% 2.21496% 0.54833% 1.84124% 1.23119% 1.61693% 0.67603% 0.83265% 0.86046% 1.10184% 1.58073% 1.51591% 1.34978% 1.81250% 0.13078% 0.48364%
M 0.41736% 0.04446% 0.29820% 0.33833% 0.15963% 0.46303% 0.11462% 0.38490% 0.25737% 0.67603% 0.07066% 0.17406% 0.17987% 0.23033% 0.33044% 0.31689% 0.28216% 0.37889% 0.02734% 0.10110%
N 0.51405% 0.05476% 0.36729% 0.41672% 0.19661% 0.57030% 0.14118% 0.47408% 0.31700% 0.83265% 0.17406% 0.10719% 0.22155% 0.28370% 0.40700% 0.39031% 0.34753% 0.46668% 0.03367% 0.12452%
P 0.53122% 0.05659% 0.37956% 0.43064% 0.20318% 0.58935% 0.14590% 0.48991% 0.32759% 0.86046% 0.17987% 0.22155% 0.11447% 0.29317% 0.42060% 0.40335% 0.35915% 0.48227% 0.03479% 0.12868%
Q 0.68024% 0.07247% 0.48603% 0.55145% 0.26017% 0.75468% 0.18682% 0.62735% 0.41949% 1.10184% 0.23033% 0.28370% 0.29317% 0.18771% 0.53858% 0.51650% 0.45989% 0.61755% 0.04456% 0.16478%
R 0.97589% 0.10397% 0.69727% 0.79112% 0.37325% 1.08268% 0.26802% 0.90000% 0.60181% 1.58073% 0.33044% 0.40700% 0.42060% 0.53858% 0.38633% 0.74098% 0.65978% 0.88596% 0.06392% 0.23640%
S 0.93587% 0.09971% 0.66868% 0.75868% 0.35794% 1.03828% 0.25703% 0.86310% 0.57713% 1.51591% 0.31689% 0.39031% 0.40335% 0.51650% 0.74098% 0.35530% 0.63272% 0.84963% 0.06130% 0.22671%
T 0.83331% 0.08878% 0.59540% 0.67553% 0.31872% 0.92450% 0.22886% 0.76851% 0.51388% 1.34978% 0.28216% 0.34753% 0.35915% 0.45989% 0.65978% 0.63272% 0.28169% 0.75652% 0.05458% 0.20186%
V 1.11898% 0.11922% 0.79951% 0.90712% 0.42798% 1.24143% 0.30732% 1.03197% 0.69005% 1.81250% 0.37889% 0.46668% 0.48227% 0.61755% 0.88596% 0.84963% 0.75652% 0.50793% 0.07330% 0.27107%
W 0.08074% 0.00860% 0.05769% 0.06545% 0.03088% 0.08957% 0.02217% 0.07446% 0.04979% 0.13078% 0.02734% 0.03367% 0.03479% 0.04456% 0.06392% 0.06130% 0.05458% 0.07330% 0.00264% 0.01956%
Y 0.29858% 0.03181% 0.21334% 0.24205% 0.11420% 0.33126% 0.08200% 0.27536% 0.18413% 0.48364% 0.10110% 0.12452% 0.12868% 0.16478% 0.23640% 0.22671% 0.20186% 0.27107% 0.01956% 0.03616%

Transition Count

  A C D E F G H I K L M N P Q R S T V W Y
A 199227713 36226731 60104772 95384771 39387739 122399281 28403431 93864932 67205782 164959226 42286506 49320873 70507867 54890808 87338357 127092599 85331640 121125280 10317687 27707103
C 36226731 5303221 3701279 4671330 5960835 8806773 2043982 14608083 5894611 24121232 6697716 3594280 3224700 3693922 8473869 17513646 9006411 17428284 793565 2825634
D 60104772 3701279 214524065 122610821 19443787 63861017 32683684 22319103 68928295 47080103 12143095 66307301 32102361 52962450 74796318 64663064 50014406 26284674 4565953 19838417
E 95384771 4671330 122610821 176272988 27759142 61300596 32096001 33792373 97179873 75636761 24216525 56631269 34636860 107742001 102470965 78856222 62493545 41820065 8321121 24685930
F 39387739 5960835 19443787 27759142 37220396 19723021 10214795 66030386 16961674 145039691 27814691 13564446 24717970 15467857 24659009 24908626 30962663 62145642 5413498 27070978
G 122399281 8806773 63861017 61300596 19723021 572227964 25044230 25040633 55378576 52341434 15493011 57607402 45323199 38056334 72134049 70702283 41910342 38536026 4133771 15089132
H 28403431 2043982 32683684 32096001 10214795 25044230 62854708 13415828 24980861 26801302 6972630 21739905 11539864 24361768 32065734 25178966 17404495 16613665 2666580 9571010
I 93864932 14608083 22319103 33792373 66030386 25040633 13415828 182202977 28629501 391215502 67469852 18107440 24373900 23216486 46784327 35749427 54504680 279803158 8143709 32239951
K 67205782 5894611 68928295 97179873 16961674 55378576 24980861 28629501 113735714 58109040 17811565 44693481 27496279 71475679 137229946 54055240 40193170 31097647 5846348 18473741
L 164959226 24121232 47080103 75636761 145039691 52341434 26801302 391215502 58109040 502432644 139440057 36218128 39489384 51863763 98514836 61253317 90580290 296966120 16565542 65879436
M 42286506 6697716 12143095 24216525 27814691 15493011 6972630 67469852 17811565 139440057 24698717 11369473 8900084 25482697 31515593 17368684 20886577 56252272 4016863 17969912
N 49320873 3594280 66307301 56631269 13564446 57607402 21739905 18107440 44693481 36218128 11369473 54075113 18736743 38781991 50521030 71751785 37446677 22090966 3388641 13300882
P 70507867 3224700 32102361 34636860 24717970 45323199 11539864 24373900 27496279 39489384 8900084 18736743 129731040 16494540 32599496 42027451 26179772 32836238 2812061 14695126
Q 54890808 3693922 52962450 107742001 15467857 38056334 24361768 23216486 71475679 51863763 25482697 38781991 16494540 125115460 88713766 41818764 32244121 26028026 6391332 13721905
R 87338357 8473869 74796318 102470965 24659009 72134049 32065734 46784327 137229946 98514836 31515593 50521030 32599496 88713766 163845679 62806888 47738762 47262820 9814792 28017158
S 127092599 17513646 64663064 78856222 24908626 70702283 25178966 35749427 54055240 61253317 17368684 71751785 42027451 41818764 62806888 173136277 145027029 44569446 4811671 16855732
T 85331640 9006411 50014406 62493545 30962663 41910342 17404495 54504680 40193170 90580290 20886577 37446677 26179772 32244121 47738762 145027029 163939809 65533130 4104200 15535271
V 121125280 17428284 26284674 41820065 62145642 38536026 16613665 279803158 31097647 296966120 56252272 22090966 32836238 26028026 47262820 44569446 65533130 175855674 7992068 31963107
W 10317687 793565 4565953 8321121 5413498 4133771 2666580 8143709 5846348 16565542 4016863 3388641 2812061 6391332 9814792 4811671 4104200 7992068 1110039 4434788
Y 27707103 2825634 19838417 24685930 27070978 15089132 9571010 32239951 18473741 65879436 17969912 13300882 14695126 13721905 28017158 16855732 15535271 31963107 4434788 15941997

Number of Amino Acids in Alignment

  A C D E F G H I K L M N P Q R S T V W Y
A 170399 - - - - - - - - - - - - - - - - - - -
C - 18647 - - - - - - - - - - - - - - - - - -
D - - 121785 - - - - - - - - - - - - - - - - -
E - - - 140195 - - - - - - - - - - - - - - - -
F - - - - 65057 - - - - - - - - - - - - - - -
G - - - - - 185186 - - - - - - - - - - - - - -
H - - - - - - 47338 - - - - - - - - - - - - -
I - - - - - - - 152193 - - - - - - - - - - - -
K - - - - - - - - 108877 - - - - - - - - - - -
L - - - - - - - - - 267326 - - - - - - - - - -
M - - - - - - - - - - 56310 - - - - - - - - -
N - - - - - - - - - - - 72879 - - - - - - - -
P - - - - - - - - - - - - 75905 - - - - - - -
Q - - - - - - - - - - - - - 93255 - - - - - -
R - - - - - - - - - - - - - - 136094 - - - - -
S - - - - - - - - - - - - - - - 128023 - - - -
T - - - - - - - - - - - - - - - - 112879 - - -
V - - - - - - - - - - - - - - - - - 150883 - -
W - - - - - - - - - - - - - - - - - - 11393 -
Y - - - - - - - - - - - - - - - - - - - 43031

Percentage of Amino Acids in Alignment

  A C D E F G H I K L M N P Q R S T V W Y
A 7.89% - - - - - - - - - - - - - - - - - - -
C - 0.86% - - - - - - - - - - - - - - - - - -
D - - 5.64% - - - - - - - - - - - - - - - - -
E - - - 6.49% - - - - - - - - - - - - - - - -
F - - - - 3.01% - - - - - - - - - - - - - - -
G - - - - - 8.58% - - - - - - - - - - - - - -
H - - - - - - 2.19% - - - - - - - - - - - - -
I - - - - - - - 7.05% - - - - - - - - - - - -
K - - - - - - - - 5.04% - - - - - - - - - - -
L - - - - - - - - - 12.3% - - - - - - - - - -
M - - - - - - - - - - 2.60% - - - - - - - - -
N - - - - - - - - - - - 3.37% - - - - - - - -
P - - - - - - - - - - - - 3.51% - - - - - - -
Q - - - - - - - - - - - - - 4.32% - - - - - -
R - - - - - - - - - - - - - - 6.30% - - - - -
S - - - - - - - - - - - - - - - 5.93% - - - -
T - - - - - - - - - - - - - - - - 5.23% - - -
V - - - - - - - - - - - - - - - - - 6.99% - -
W - - - - - - - - - - - - - - - - - - 0.52% -
Y - - - - - - - - - - - - - - - - - - - 1.99%