Ankyrin Repeat

Blosum Log2 No Clustering

  A C D E F G H I K L M N P Q R S T V W Y
A 6 1 -9 -5 -7 -1 -9 -4 -6 -6 -4 -4 -4 -6 -6 1 -3 -2 -8 -5
C 1 6 -5 -3 -1 -3 -2 0 0 -1 -1 1 -4 -1 -2 3 1 1 -3 1
D -9 -5 10 3 -11 -6 -6 -9 -3 -11 -10 -2 -7 -4 -6 -6 -8 -10 -9 -4
E -5 -3 3 12 -6 -4 -3 -6 0 -6 -6 0 -1 1 -3 -2 -4 -7 -10 1
F -7 -1 -11 -6 7 -9 -7 -3 -5 -2 -4 -9 -9 -4 -8 -6 -6 -5 -4 0
G -1 -3 -6 -4 -9 6 -12 -9 -5 -8 -7 -4 -8 -6 -8 -2 -7 -7 -8 -8
H -9 -2 -6 -3 -7 -12 10 -10 -6 -9 -9 -3 -9 4 -5 -6 -9 -11 -6 -2
I -4 0 -9 -6 -3 -9 -10 6 -5 -1 -1 -6 -7 -6 -8 -6 -4 2 -7 -5
K -6 0 -3 0 -5 -5 -6 -5 11 -4 -5 1 -4 3 4 -2 -2 -6 -7 -3
L -6 -1 -11 -6 -2 -8 -9 -1 -4 5 0 -7 -7 -5 -7 -6 -5 -3 -5 -4
M -4 -1 -10 -6 -4 -7 -9 -1 -5 0 7 -6 -7 -2 -7 -5 -4 -2 -6 -4
N -4 1 -2 0 -9 -4 -3 -6 1 -7 -6 9 -4 0 -3 -2 -4 -7 -8 -3
P -4 -4 -7 -1 -9 -8 -9 -7 -4 -7 -7 -4 8 -4 -5 -2 -4 -5 -7 -8
Q -6 -1 -4 1 -4 -6 4 -6 3 -5 -2 0 -4 11 4 -2 -2 -5 -7 0
R -6 -2 -6 -3 -8 -8 -5 -8 4 -7 -7 -3 -5 4 11 -5 -7 -9 -4 -6
S 1 3 -6 -2 -6 -2 -6 -6 -2 -6 -5 -2 -2 -2 -5 6 -1 -5 -7 -5
T -3 1 -8 -4 -6 -7 -9 -4 -2 -5 -4 -4 -4 -2 -7 -1 7 -3 -9 -4
V -2 1 -10 -7 -5 -7 -11 2 -6 -3 -2 -7 -5 -5 -9 -5 -3 6 -8 -5
W -8 -3 -9 -10 -4 -8 -6 -7 -7 -5 -6 -8 -7 -7 -4 -7 -9 -8 10 0
Y -5 1 -4 1 0 -8 -2 -5 -3 -4 -4 -3 -8 0 -6 -5 -4 -5 0 9

Blosum LN No Clustering

  A C D E F G H I K L M N P Q R S T V W Y
A 4 1 -6 -4 -5 -1 -7 -3 -4 -4 -3 -3 -3 -4 -5 1 -2 -2 -6 -4
C 1 4 -4 -2 -1 -2 -2 0 0 -1 -1 1 -3 -1 -2 2 1 0 -2 0
D -6 -4 7 2 -8 -4 -4 -6 -2 -7 -7 -1 -5 -3 -4 -4 -6 -7 -6 -3
E -4 -2 2 8 -4 -3 -2 -4 0 -4 -4 0 -1 1 -2 -1 -3 -5 -7 1
F -5 -1 -8 -4 5 -6 -5 -2 -3 -2 -3 -6 -6 -3 -6 -4 -4 -3 -3 0
G -1 -2 -4 -3 -6 4 -8 -6 -3 -6 -5 -3 -5 -4 -5 -1 -5 -5 -5 -6
H -7 -2 -4 -2 -5 -8 7 -7 -4 -7 -6 -2 -6 2 -3 -4 -6 -8 -4 -1
I -3 0 -6 -4 -2 -6 -7 4 -4 -1 -1 -4 -5 -4 -6 -4 -3 2 -5 -4
K -4 0 -2 0 -3 -3 -4 -4 8 -3 -3 1 -3 2 3 -1 -2 -4 -5 -2
L -4 -1 -7 -4 -2 -6 -7 -1 -3 3 0 -5 -5 -3 -5 -4 -3 -2 -4 -3
M -3 -1 -7 -4 -3 -5 -6 -1 -3 0 5 -4 -5 -2 -5 -3 -3 -2 -4 -3
N -3 1 -1 0 -6 -3 -2 -4 1 -5 -4 6 -3 0 -2 -1 -3 -5 -5 -2
P -3 -3 -5 -1 -6 -5 -6 -5 -3 -5 -5 -3 6 -3 -3 -2 -3 -3 -5 -6
Q -4 -1 -3 1 -3 -4 2 -4 2 -3 -2 0 -3 8 3 -1 -2 -4 -5 0
R -5 -2 -4 -2 -6 -5 -3 -6 3 -5 -5 -2 -3 3 8 -4 -5 -6 -3 -4
S 1 2 -4 -1 -4 -1 -4 -4 -1 -4 -3 -1 -2 -1 -4 4 -1 -3 -5 -3
T -2 1 -6 -3 -4 -5 -6 -3 -2 -3 -3 -3 -3 -2 -5 -1 5 -2 -6 -3
V -2 0 -7 -5 -3 -5 -8 2 -4 -2 -2 -5 -3 -4 -6 -3 -2 4 -6 -4
W -6 -2 -6 -7 -3 -5 -4 -5 -5 -4 -4 -5 -5 -5 -3 -5 -6 -6 7 0
Y -4 0 -3 1 0 -6 -1 -4 -2 -3 -3 -2 -6 0 -4 -3 -3 -4 0 6

Blosum Log10 No Clustering

  A C D E F G H I K L M N P Q R S T V W Y
A 2 0 -3 -2 -2 0 -3 -1 -2 -2 -1 -1 -1 -2 -2 0 -1 -1 -3 -2
C 0 2 -2 -1 0 -1 -1 0 0 0 0 0 -1 0 -1 1 0 0 -1 0
D -3 -2 3 1 -3 -2 -2 -3 -1 -3 -3 -1 -2 -1 -2 -2 -3 -3 -3 -1
E -2 -1 1 4 -2 -1 -1 -2 0 -2 -2 0 0 0 -1 -1 -1 -2 -3 0
F -2 0 -3 -2 2 -3 -2 -1 -2 -1 -1 -3 -3 -1 -3 -2 -2 -1 -1 0
G 0 -1 -2 -1 -3 2 -3 -3 -1 -2 -2 -1 -2 -2 -2 -1 -2 -2 -2 -2
H -3 -1 -2 -1 -2 -3 3 -3 -2 -3 -3 -1 -3 1 -1 -2 -3 -3 -2 -1
I -1 0 -3 -2 -1 -3 -3 2 -2 0 0 -2 -2 -2 -2 -2 -1 1 -2 -2
K -2 0 -1 0 -2 -1 -2 -2 3 -1 -1 0 -1 1 1 -1 -1 -2 -2 -1
L -2 0 -3 -2 -1 -2 -3 0 -1 1 0 -2 -2 -1 -2 -2 -2 -1 -2 -1
M -1 0 -3 -2 -1 -2 -3 0 -1 0 2 -2 -2 -1 -2 -1 -1 -1 -2 -1
N -1 0 -1 0 -3 -1 -1 -2 0 -2 -2 3 -1 0 -1 0 -1 -2 -2 -1
P -1 -1 -2 0 -3 -2 -3 -2 -1 -2 -2 -1 2 -1 -1 -1 -1 -1 -2 -3
Q -2 0 -1 0 -1 -2 1 -2 1 -1 -1 0 -1 3 1 -1 -1 -2 -2 0
R -2 -1 -2 -1 -3 -2 -1 -2 1 -2 -2 -1 -1 1 3 -2 -2 -3 -1 -2
S 0 1 -2 -1 -2 -1 -2 -2 -1 -2 -1 0 -1 -1 -2 2 0 -1 -2 -1
T -1 0 -3 -1 -2 -2 -3 -1 -1 -2 -1 -1 -1 -1 -2 0 2 -1 -3 -1
V -1 0 -3 -2 -1 -2 -3 1 -2 -1 -1 -2 -1 -2 -3 -1 -1 2 -3 -2
W -3 -1 -3 -3 -1 -2 -2 -2 -2 -2 -2 -2 -2 -2 -1 -2 -3 -3 3 0
Y -2 0 -1 0 0 -2 -1 -2 -1 -1 -1 -1 -3 0 -2 -1 -1 -2 0 3

Distance Log2

  A C D E F G H I K L M N P Q R S T V W Y
A 3 10 11 11 9 6 12 7 11 8 8 9 8 11 11 5 7 7 11 9
C 10 13 14 15 11 12 13 10 13 10 11 11 13 14 14 9 10 10 14 12
D 11 14 4 8 12 9 11 11 11 11 12 9 11 12 12 10 11 12 13 10
E 11 15 8 6 11 10 11 11 11 11 12 9 9 10 12 9 10 12 15 9
F 9 11 12 11 3 9 10 7 10 6 8 11 10 10 12 8 9 8 9 7
G 6 12 9 10 9 3 12 9 10 8 9 8 10 11 11 6 9 9 10 10
H 12 13 11 11 10 12 4 11 12 11 12 9 12 8 11 10 11 12 11 9
I 7 10 11 11 7 9 11 3 10 5 6 9 10 11 11 8 8 4 10 9
K 11 13 11 11 10 10 12 10 6 9 11 8 11 9 8 9 9 11 13 11
L 8 10 11 11 6 8 11 5 9 2 5 9 9 10 10 8 7 6 9 8
M 8 11 12 12 8 9 12 6 11 5 4 10 10 10 12 8 8 7 11 10
N 9 11 9 9 11 8 9 9 8 9 10 4 9 9 10 7 9 10 12 9
P 8 13 11 9 10 10 12 10 11 9 10 9 4 11 11 7 8 9 11 12
Q 11 14 12 10 10 11 8 11 9 10 10 9 11 7 9 9 10 11 13 10
R 11 14 12 12 12 11 11 11 8 10 12 10 11 9 5 10 11 12 11 12
S 5 9 10 9 8 6 10 8 9 8 8 7 7 9 10 3 6 8 10 9
T 7 10 11 10 9 9 11 8 9 7 8 9 8 10 11 6 3 7 11 9
V 7 10 12 12 8 9 12 4 11 6 7 10 9 11 12 8 7 4 11 10
W 11 14 13 15 9 10 11 10 13 9 11 12 11 13 11 10 11 11 4 8
Y 9 12 10 9 7 10 9 9 11 8 10 9 12 10 12 9 9 10 8 5

Distance LN

  A C D E F G H I K L M N P Q R S T V W Y
A 2 7 8 7 6 4 8 5 7 5 5 6 5 7 7 3 4 4 7 6
C 7 9 10 10 7 8 9 7 9 7 8 7 9 9 9 6 7 7 9 8
D 8 10 3 5 8 6 7 7 7 8 8 6 7 8 8 6 7 8 8 7
E 7 10 5 4 7 7 7 7 7 7 8 6 6 7 8 6 7 8 10 6
F 6 7 8 7 2 6 7 4 7 4 5 7 7 7 8 5 6 5 6 4
G 4 8 6 7 6 1 8 6 7 5 6 5 6 7 7 4 6 6 7 7
H 8 9 7 7 7 8 3 8 8 7 8 6 8 5 7 7 8 8 7 6
I 5 7 7 7 4 6 8 2 7 3 4 6 6 7 8 5 5 3 7 6
K 7 9 7 7 7 7 8 7 4 6 7 6 7 6 5 6 6 7 9 7
L 5 7 8 7 4 5 7 3 6 1 3 6 6 6 7 5 5 4 6 5
M 5 8 8 8 5 6 8 4 7 3 2 7 7 7 8 5 5 5 7 6
N 6 7 6 6 7 5 6 6 6 6 7 3 6 6 7 5 6 7 8 6
P 5 9 7 6 7 6 8 6 7 6 7 6 2 7 7 5 5 6 7 8
Q 7 9 8 7 7 7 5 7 6 6 7 6 7 4 6 6 6 7 9 6
R 7 9 8 8 8 7 7 8 5 7 8 7 7 6 3 7 7 8 7 8
S 3 6 6 6 5 4 7 5 6 5 5 5 5 6 7 2 4 5 7 6
T 4 7 7 7 6 6 8 5 6 5 5 6 5 6 7 4 2 5 8 6
V 4 7 8 8 5 6 8 3 7 4 5 7 6 7 8 5 5 2 8 6
W 7 9 8 10 6 7 7 7 9 6 7 8 7 9 7 7 8 8 3 5
Y 6 8 7 6 4 7 6 6 7 5 6 6 8 6 8 6 6 6 5 3

Distance Log10

  A C D E F G H I K L M N P Q R S T V W Y
A 0 2 3 3 2 1 3 2 3 2 2 2 2 3 3 1 1 1 3 2
C 2 3 4 4 3 3 3 2 3 2 3 3 3 4 3 2 2 2 3 3
D 3 4 1 2 3 2 3 3 2 3 3 2 3 3 3 2 3 3 3 2
E 3 4 2 1 3 2 3 3 3 2 3 2 2 2 3 2 2 3 4 2
F 2 3 3 3 0 2 2 1 2 1 2 3 2 2 3 2 2 2 2 1
G 1 3 2 2 2 0 3 2 2 2 2 2 2 3 3 1 2 2 2 2
H 3 3 3 3 2 3 1 3 3 3 3 2 3 2 3 2 3 3 3 2
I 2 2 3 3 1 2 3 0 2 1 1 2 2 3 3 2 2 1 2 2
K 3 3 2 3 2 2 3 2 1 2 3 2 3 2 2 2 2 3 3 3
L 2 2 3 2 1 2 3 1 2 0 1 2 2 2 2 2 2 1 2 2
M 2 3 3 3 2 2 3 1 3 1 0 2 2 2 3 2 2 1 2 2
N 2 3 2 2 3 2 2 2 2 2 2 1 2 2 2 2 2 2 3 2
P 2 3 3 2 2 2 3 2 3 2 2 2 0 3 2 1 2 2 3 3
Q 3 4 3 2 2 3 2 3 2 2 2 2 3 1 2 2 2 3 3 2
R 3 3 3 3 3 3 3 3 2 2 3 2 2 2 1 2 3 3 3 3
S 1 2 2 2 2 1 2 2 2 2 2 2 1 2 2 0 1 2 2 2
T 1 2 3 2 2 2 3 2 2 2 2 2 2 2 3 1 0 2 3 2
V 1 2 3 3 2 2 3 1 3 1 1 2 2 3 3 2 2 0 3 2
W 3 3 3 4 2 2 3 2 3 2 2 3 3 3 3 2 3 3 1 2
Y 2 3 2 2 1 2 2 2 3 2 2 2 3 2 3 2 2 2 2 1

Observed Probability of Transition

  A C D E F G H I K L M N P Q R S T V W Y
A 4.86809% 0.04868% 0.02009% 0.02633% 0.12234% 0.89898% 0.01715% 0.30011% 0.02294% 0.25393% 0.18924% 0.11439% 0.20380% 0.02318% 0.02652% 1.97267% 0.41298% 0.47666% 0.02160% 0.07438%
C 0.04868% 0.00470% 0.00224% 0.00147% 0.02590% 0.01663% 0.00609% 0.04078% 0.00534% 0.04510% 0.01879% 0.02257% 0.00584% 0.00306% 0.00338% 0.09292% 0.04040% 0.03852% 0.00350% 0.01589%
D 0.02009% 0.00224% 2.59315% 0.16310% 0.01098% 0.08152% 0.02311% 0.02424% 0.03171% 0.01997% 0.01086% 0.11137% 0.02858% 0.01402% 0.01226% 0.06498% 0.02138% 0.01398% 0.00798% 0.04139%
E 0.02633% 0.00147% 0.16310% 0.69773% 0.02467% 0.04740% 0.02464% 0.02463% 0.02634% 0.03265% 0.01309% 0.07917% 0.06993% 0.03472% 0.01143% 0.08597% 0.04067% 0.01388% 0.00186% 0.09929%
F 0.12234% 0.02590% 0.01098% 0.02467% 6.43828% 0.08041% 0.04326% 0.44117% 0.03718% 0.94822% 0.24780% 0.02851% 0.03592% 0.03887% 0.01477% 0.16451% 0.13188% 0.21187% 0.11171% 0.42322%
G 0.89898% 0.01663% 0.08152% 0.04740% 0.08041% 8.30634% 0.01075% 0.08399% 0.04782% 0.15846% 0.08151% 0.18730% 0.06879% 0.02458% 0.02391% 0.75652% 0.13122% 0.10730% 0.03626% 0.03584%
H 0.01715% 0.00609% 0.02311% 0.02464% 0.04326% 0.01075% 2.70634% 0.01884% 0.01020% 0.03077% 0.01545% 0.08763% 0.01342% 0.22473% 0.02047% 0.05302% 0.01974% 0.00984% 0.02064% 0.09967%
I 0.30011% 0.04078% 0.02424% 0.02463% 0.44117% 0.08399% 0.01884% 5.56440% 0.04120% 1.81519% 0.77120% 0.07568% 0.06782% 0.02470% 0.01728% 0.17543% 0.25757% 2.69115% 0.03974% 0.08427%
K 0.02294% 0.00534% 0.03171% 0.02634% 0.03718% 0.04782% 0.01020% 0.04120% 0.80249% 0.09819% 0.02836% 0.13968% 0.03007% 0.09305% 0.16206% 0.11567% 0.07696% 0.02358% 0.00724% 0.02741%
L 0.25393% 0.04510% 0.01997% 0.03265% 0.94822% 0.15846% 0.03077% 1.81519% 0.09819% 9.82254% 1.66879% 0.07475% 0.09681% 0.05627% 0.03981% 0.22405% 0.31000% 0.74932% 0.11156% 0.20583%
M 0.18924% 0.01879% 0.01086% 0.01309% 0.24780% 0.08151% 0.01545% 0.77120% 0.02836% 1.66879% 3.51740% 0.04666% 0.04030% 0.05090% 0.01483% 0.18002% 0.19966% 0.34300% 0.03437% 0.06862%
N 0.11439% 0.02257% 0.11137% 0.07917% 0.02851% 0.18730% 0.08763% 0.07568% 0.13968% 0.07475% 0.04666% 2.58809% 0.09233% 0.08417% 0.03867% 0.31411% 0.10483% 0.04109% 0.01235% 0.07338%
P 0.20380% 0.00584% 0.02858% 0.06993% 0.03592% 0.06879% 0.01342% 0.06782% 0.03007% 0.09681% 0.04030% 0.09233% 4.12073% 0.02661% 0.03282% 0.33085% 0.17931% 0.13019% 0.02144% 0.01571%
Q 0.02318% 0.00306% 0.01402% 0.03472% 0.03887% 0.02458% 0.22473% 0.02470% 0.09305% 0.05627% 0.05090% 0.08417% 0.02661% 0.54681% 0.13012% 0.08590% 0.06597% 0.02330% 0.00585% 0.05880%
R 0.02652% 0.00338% 0.01226% 0.01143% 0.01477% 0.02391% 0.02047% 0.01728% 0.16206% 0.03981% 0.01483% 0.03867% 0.03282% 0.13012% 1.35320% 0.04079% 0.02118% 0.01086% 0.02516% 0.01114%
S 1.97267% 0.09292% 0.06498% 0.08597% 0.16451% 0.75652% 0.05302% 0.17543% 0.11567% 0.22405% 0.18002% 0.31411% 0.33085% 0.08590% 0.04079% 5.06356% 0.79797% 0.21179% 0.03784% 0.08926%
T 0.41298% 0.04040% 0.02138% 0.04067% 0.13188% 0.13122% 0.01974% 0.25757% 0.07696% 0.31000% 0.19966% 0.10483% 0.17931% 0.06597% 0.02118% 0.79797% 5.00769% 0.31557% 0.01823% 0.08439%
V 0.47666% 0.03852% 0.01398% 0.01388% 0.21187% 0.10730% 0.00984% 2.69115% 0.02358% 0.74932% 0.34300% 0.04109% 0.13019% 0.02330% 0.01086% 0.21179% 0.31557% 4.23720% 0.01934% 0.06121%
W 0.02160% 0.00350% 0.00798% 0.00186% 0.11171% 0.03626% 0.02064% 0.03974% 0.00724% 0.11156% 0.03437% 0.01235% 0.02144% 0.00585% 0.02516% 0.03784% 0.01823% 0.01934% 2.27380% 0.18302%
Y 0.07438% 0.01589% 0.04139% 0.09929% 0.42322% 0.03584% 0.09967% 0.08427% 0.02741% 0.20583% 0.06862% 0.07338% 0.01571% 0.05880% 0.01114% 0.08926% 0.08439% 0.06121% 0.18302% 2.04784%

Expected Probability of Transition

  A C D E F G H I K L M N P Q R S T V W Y
A 0.55967% 0.03341% 0.44064% 0.16584% 1.19846% 1.45821% 0.46100% 1.35586% 0.19676% 1.98884% 0.82728% 0.51656% 0.72806% 0.16177% 0.25166% 1.19110% 0.99090% 1.04488% 0.39405% 0.43753%
C 0.03341% 0.00049% 0.01315% 0.00495% 0.03577% 0.04352% 0.01376% 0.04047% 0.00587% 0.05936% 0.02469% 0.01541% 0.02173% 0.00482% 0.00751% 0.03555% 0.02957% 0.03118% 0.01176% 0.01306%
D 0.44064% 0.01315% 0.08673% 0.06528% 0.47179% 0.57405% 0.18148% 0.53376% 0.07745% 0.78294% 0.32567% 0.20335% 0.28661% 0.06368% 0.09907% 0.46889% 0.39008% 0.41133% 0.15512% 0.17224%
E 0.16584% 0.00495% 0.06528% 0.01228% 0.17756% 0.21604% 0.06830% 0.20088% 0.02915% 0.29466% 0.12257% 0.07653% 0.10787% 0.02396% 0.03728% 0.17647% 0.14681% 0.15480% 0.05838% 0.06482%
F 1.19846% 0.03577% 0.47179% 0.17756% 0.64158% 1.56129% 0.49358% 1.45170% 0.21066% 2.12942% 0.88576% 0.55307% 0.77953% 0.17321% 0.26945% 1.27529% 1.06094% 1.11874% 0.42191% 0.46845%
G 1.45821% 0.04352% 0.57405% 0.21604% 1.56129% 0.94984% 0.60056% 1.76635% 0.25632% 2.59095% 1.07774% 0.67295% 0.94848% 0.21075% 0.32785% 1.55170% 1.29089% 1.36121% 0.51335% 0.56999%
H 0.46100% 0.01376% 0.18148% 0.06830% 0.49358% 0.60056% 0.09493% 0.55841% 0.08103% 0.81910% 0.34071% 0.21274% 0.29985% 0.06662% 0.10364% 0.49055% 0.40810% 0.43033% 0.16229% 0.18019%
I 1.35586% 0.04047% 0.53376% 0.20088% 1.45170% 1.76635% 0.55841% 0.82118% 0.23833% 2.40910% 1.00210% 0.62572% 0.88191% 0.19596% 0.30484% 1.44279% 1.20028% 1.26567% 0.47732% 0.52998%
K 0.19676% 0.00587% 0.07745% 0.02915% 0.21066% 0.25632% 0.08103% 0.23833% 0.01729% 0.34960% 0.14542% 0.09080% 0.12798% 0.02843% 0.04423% 0.20937% 0.17418% 0.18367% 0.06926% 0.07691%
L 1.98884% 0.05936% 0.78294% 0.29466% 2.12942% 2.59095% 0.81910% 2.40910% 0.34960% 1.76688% 1.46992% 0.91783% 1.29362% 0.28744% 0.44715% 2.11634% 1.76062% 1.85654% 0.70016% 0.77740%
M 0.82728% 0.02469% 0.32567% 0.12257% 0.88576% 1.07774% 0.34071% 1.00210% 0.14542% 1.46992% 0.30571% 0.38178% 0.53810% 0.11956% 0.18599% 0.88032% 0.73236% 0.77225% 0.29124% 0.32337%
N 0.51656% 0.01541% 0.20335% 0.07653% 0.55307% 0.67295% 0.21274% 0.62572% 0.09080% 0.91783% 0.38178% 0.11919% 0.33599% 0.07465% 0.11613% 0.54968% 0.45729% 0.48220% 0.18185% 0.20191%
P 0.72806% 0.02173% 0.28661% 0.10787% 0.77953% 0.94848% 0.29985% 0.88191% 0.12798% 1.29362% 0.53810% 0.33599% 0.23678% 0.10522% 0.16369% 0.77474% 0.64452% 0.67963% 0.25631% 0.28458%
Q 0.16177% 0.00482% 0.06368% 0.02396% 0.17321% 0.21075% 0.06662% 0.19596% 0.02843% 0.28744% 0.11956% 0.07465% 0.10522% 0.01169% 0.03637% 0.17215% 0.14321% 0.15101% 0.05695% 0.06323%
R 0.25166% 0.00751% 0.09907% 0.03728% 0.26945% 0.32785% 0.10364% 0.30484% 0.04423% 0.44715% 0.18599% 0.11613% 0.16369% 0.03637% 0.02829% 0.26779% 0.22278% 0.23492% 0.08859% 0.09837%
S 1.19110% 0.03555% 0.46889% 0.17647% 1.27529% 1.55170% 0.49055% 1.44279% 0.20937% 2.11634% 0.88032% 0.54968% 0.77474% 0.17215% 0.26779% 0.63373% 1.05442% 1.11187% 0.41932% 0.46558%
T 0.99090% 0.02957% 0.39008% 0.14681% 1.06094% 1.29089% 0.40810% 1.20028% 0.17418% 1.76062% 0.73236% 0.45729% 0.64452% 0.14321% 0.22278% 1.05442% 0.43860% 0.92498% 0.34884% 0.38732%
V 1.04488% 0.03118% 0.41133% 0.15480% 1.11874% 1.36121% 0.43033% 1.26567% 0.18367% 1.85654% 0.77225% 0.48220% 0.67963% 0.15101% 0.23492% 1.11187% 0.92498% 0.48768% 0.36784% 0.40842%
W 0.39405% 0.01176% 0.15512% 0.05838% 0.42191% 0.51335% 0.16229% 0.47732% 0.06926% 0.70016% 0.29124% 0.18185% 0.25631% 0.05695% 0.08859% 0.41932% 0.34884% 0.36784% 0.06936% 0.15403%
Y 0.43753% 0.01306% 0.17224% 0.06482% 0.46845% 0.56999% 0.18019% 0.52998% 0.07691% 0.77740% 0.32337% 0.20191% 0.28458% 0.06323% 0.09837% 0.46558% 0.38732% 0.40842% 0.15403% 0.08551%

Transition Count

  A C D E F G H I K L M N P Q R S T V W Y
A 617083120 6171404 2547047 3337821 15508210 113956457 2174681 38042265 2908720 32188350 23989148 14501161 25833991 2938692 3362242 250057595 52350017 60422640 2738851 9428534
C 6171404 596229 284451 187391 3283676 2109156 773022 5170221 677332 5717354 2382238 2860984 741185 388840 428858 11779725 5121485 4882779 444246 2014921
D 2547047 284451 328709822 20674971 1391896 10334352 2930437 3073696 4020295 2531996 1377480 14117909 3622803 1777123 1555267 8237005 2710600 1772498 1011658 5246848
E 3337821 187391 20674971 88445430 3127815 6008526 3123791 3123242 3339401 4138918 1659283 10036736 8864953 4401610 1449334 10897589 5155464 1760108 236682 12587085
F 15508210 3283676 1391896 3127815 816122128 10193478 5484169 55923862 4713429 120197082 31411783 3614230 4553844 4928238 1872636 20854355 16717327 26857501 14160488 53647838
G 113956457 2109156 10334352 6008526 10193478 1052918573 1363635 10647613 6062536 20087040 10333248 23743300 8720622 3115835 3031301 95897895 16633817 13601866 4596560 4544234
H 2174681 773022 2930437 3123791 5484169 1363635 343058485 2388980 1293828 3900684 1958761 11108290 1701697 28486923 2594804 6720907 2502907 1248122 2617473 12634570
I 38042265 5170221 3073696 3123242 55923862 10647613 2388980 705347946 5222779 230095795 97758775 9593419 8597896 3131694 2190988 22237861 32649758 341132389 5037841 10682803
K 2908720 677332 4020295 3339401 4713429 6062536 1293828 5222779 101725314 12446815 3595067 17706588 3812105 11795982 20543646 14662712 9756417 2989917 918668 3474797
L 32188350 5717354 2531996 4138918 120197082 20087040 3900684 230095795 12446815 1245113298 211537394 9475504 12272244 7133471 5046796 28400880 39296292 94985335 14141903 26091741
M 23989148 2382238 1377480 1659283 31411783 10333248 1958761 97758775 3595067 211537394 445869520 5915193 5108798 6453153 1880848 22819557 25309966 43479595 4357630 8698319
N 14501161 2860984 14117909 10036736 3614230 23743300 11108290 9593419 17706588 9475504 5915193 328069105 11704248 10669609 4902997 39817519 13289522 5208769 1566314 9302231
P 25833991 741185 3622803 8864953 4553844 8720622 1701697 8597896 3812105 12272244 5108798 11704248 522347212 3374030 4161379 41938946 22730046 16503462 2718875 1991576
Q 2938692 388840 1777123 4401610 4928238 3115835 28486923 3131694 11795982 7133471 6453153 10669609 3374030 69314893 16494056 10888750 8362919 2954310 741678 7453692
R 3362242 428858 1555267 1449334 1872636 3031301 2594804 2190988 20543646 5046796 1880848 4902997 4161379 16494056 171533678 5170925 2685458 1376906 3189706 1412432
S 250057595 11779725 8237005 10897589 20854355 95897895 6720907 22237861 14662712 28400880 22819557 39817519 41938946 10888750 5170925 641861530 101151262 26847501 4796614 11315379
T 52350017 5121485 2710600 5155464 16717327 16633817 2502907 32649758 9756417 39296292 25309966 13289522 22730046 8362919 2685458 101151262 634779669 40001870 2310804 10698429
V 60422640 4882779 1772498 1760108 26857501 13601866 1248122 341132389 2989917 94985335 43479595 5208769 16503462 2954310 1376906 26847501 40001870 537111349 2452692 7759045
W 2738851 444246 1011658 236682 14160488 4596560 2617473 5037841 918668 14141903 4357630 1566314 2718875 741678 3189706 4796614 2310804 2452692 288229211 23200229
Y 9428534 2014921 5246848 12587085 53647838 4544234 12634570 10682803 3474797 26091741 8698319 9302231 1991576 7453692 1412432 11315379 10698429 7759045 23200229 259585798

Number of Amino Acids in Alignment

  A C D E F G H I K L M N P Q R S T V W Y
A 240401 - - - - - - - - - - - - - - - - - - -
C - 7309 - - - - - - - - - - - - - - - - - -
D - - 99110 - - - - - - - - - - - - - - - - -
E - - - 38083 - - - - - - - - - - - - - - - -
F - - - - 272983 - - - - - - - - - - - - - - -
G - - - - - 324643 - - - - - - - - - - - - - -
H - - - - - - 105542 - - - - - - - - - - - - -
I - - - - - - - 298119 - - - - - - - - - - - -
K - - - - - - - - 44868 - - - - - - - - - - -
L - - - - - - - - - 428424 - - - - - - - - - -
M - - - - - - - - - - 185091 - - - - - - - - -
N - - - - - - - - - - - 114372 - - - - - - - -
P - - - - - - - - - - - - 161615 - - - - - - -
Q - - - - - - - - - - - - - 40513 - - - - - -
R - - - - - - - - - - - - - - 57157 - - - - -
S - - - - - - - - - - - - - - - 257322 - - - -
T - - - - - - - - - - - - - - - - 212154 - - -
V - - - - - - - - - - - - - - - - - 228100 - -
W - - - - - - - - - - - - - - - - - - 89225 -
Y - - - - - - - - - - - - - - - - - - - 104574

Percentage of Amino Acids in Alignment

  A C D E F G H I K L M N P Q R S T V W Y
A 7.26% - - - - - - - - - - - - - - - - - - -
C - 0.22% - - - - - - - - - - - - - - - - - -
D - - 2.99% - - - - - - - - - - - - - - - - -
E - - - 1.15% - - - - - - - - - - - - - - - -
F - - - - 8.24% - - - - - - - - - - - - - - -
G - - - - - 9.80% - - - - - - - - - - - - - -
H - - - - - - 3.18% - - - - - - - - - - - - -
I - - - - - - - 9.00% - - - - - - - - - - - -
K - - - - - - - - 1.35% - - - - - - - - - - -
L - - - - - - - - - 12.9% - - - - - - - - - -
M - - - - - - - - - - 5.59% - - - - - - - - -
N - - - - - - - - - - - 3.45% - - - - - - - -
P - - - - - - - - - - - - 4.88% - - - - - - -
Q - - - - - - - - - - - - - 1.22% - - - - - -
R - - - - - - - - - - - - - - 1.72% - - - - -
S - - - - - - - - - - - - - - - 7.77% - - - -
T - - - - - - - - - - - - - - - - 6.41% - - -
V - - - - - - - - - - - - - - - - - 6.89% - -
W - - - - - - - - - - - - - - - - - - 2.69% -
Y - - - - - - - - - - - - - - - - - - - 3.15%