Cytochrome b(N-terminal)/b6/petB

Accession number: PF00033

Blosum Log2 No Clustering

  A C D E F G H I K L M N P Q R S T V W Y
A 6 -8 -8 -7 -8 -3 -13 -3 -9 -4 -1 -8 -1 -8 -12 0 -1 -3 -15 -11
C -8 11 -14 -16 -6 -10 -5 -9 -16 -6 -4 -9 -16 -9 -9 -4 -3 -7 -5 -9
D -8 -14 11 1 -14 -6 -4 -11 -2 -13 -7 3 -8 -2 -12 -3 -3 -11 -13 -10
E -7 -16 1 12 -10 -8 -4 -8 2 -6 -6 -2 -5 5 -5 -5 -2 -8 -12 -8
F -8 -6 -14 -10 7 -11 -10 -6 -6 -1 -2 -7 -12 -11 -11 -9 -9 -6 -8 0
G -3 -10 -6 -8 -11 7 -13 -11 -10 -10 -9 -8 -10 -11 -11 -7 -11 -10 -14 -11
H -13 -5 -4 -4 -10 -13 9 -16 -8 -12 -14 -5 -9 -7 -7 -9 -10 -16 -17 -5
I -3 -9 -11 -8 -6 -11 -16 6 -5 0 0 -6 -11 -11 -14 -6 -1 2 -15 -12
K -9 -16 -2 2 -6 -10 -8 -5 12 -3 -1 2 -2 -1 -5 -2 -1 -9 -14 -8
L -4 -6 -13 -6 -1 -10 -12 0 -3 5 0 -7 -9 -10 -11 -7 -3 -2 -9 -8
M -1 -4 -7 -6 -2 -9 -14 0 -1 0 8 -5 -10 -9 -12 -5 -2 0 -8 -8
N -8 -9 3 -2 -7 -8 -5 -6 2 -7 -5 8 -4 2 -8 -2 -3 -9 -9 0
P -1 -16 -8 -5 -12 -10 -9 -11 -2 -9 -10 -4 10 -2 -9 -4 -7 -11 -15 -15
Q -8 -9 -2 5 -11 -11 -7 -11 -1 -10 -9 2 -2 11 0 -5 -2 -11 -10 -7
R -12 -9 -12 -5 -11 -11 -7 -14 -5 -11 -12 -8 -9 0 10 -12 -10 -15 -7 -9
S 0 -4 -3 -5 -9 -7 -9 -6 -2 -7 -5 -2 -4 -5 -12 7 -1 -5 -10 -6
T -1 -3 -3 -2 -9 -11 -10 -1 -1 -3 -2 -3 -7 -2 -10 -1 6 -2 -13 -9
V -3 -7 -11 -8 -6 -10 -16 2 -9 -2 0 -9 -11 -11 -15 -5 -2 7 -13 -10
W -15 -5 -13 -12 -8 -14 -17 -15 -14 -9 -8 -9 -15 -10 -7 -10 -13 -13 10 -7
Y -11 -9 -10 -8 0 -11 -5 -12 -8 -8 -8 0 -15 -7 -9 -6 -9 -10 -7 8

Blosum LN No Clustering

  A C D E F G H I K L M N P Q R S T V W Y
A 4 -5 -5 -5 -6 -2 -9 -2 -6 -3 -1 -5 -1 -6 -8 0 -1 -2 -10 -7
C -5 8 -9 -11 -4 -7 -4 -6 -11 -4 -3 -6 -11 -6 -7 -3 -2 -5 -3 -6
D -5 -9 7 0 -10 -4 -3 -8 -1 -9 -5 2 -6 -1 -8 -2 -2 -8 -9 -7
E -5 -11 0 8 -7 -6 -3 -6 1 -4 -5 -1 -4 4 -4 -3 -1 -6 -8 -6
F -6 -4 -10 -7 5 -8 -7 -4 -4 -1 -1 -5 -8 -8 -8 -6 -6 -4 -5 0
G -2 -7 -4 -6 -8 5 -9 -7 -7 -7 -6 -6 -7 -8 -8 -5 -7 -7 -10 -7
H -9 -4 -3 -3 -7 -9 6 -11 -5 -9 -10 -3 -6 -5 -5 -6 -7 -11 -12 -3
I -2 -6 -8 -6 -4 -7 -11 4 -4 0 0 -4 -8 -7 -10 -4 -1 1 -10 -8
K -6 -11 -1 1 -4 -7 -5 -4 8 -2 -1 2 -2 -1 -4 -1 -1 -6 -10 -6
L -3 -4 -9 -4 -1 -7 -9 0 -2 3 0 -5 -6 -7 -8 -5 -2 -2 -6 -5
M -1 -3 -5 -5 -1 -6 -10 0 -1 0 5 -4 -7 -6 -8 -3 -1 0 -6 -6
N -5 -6 2 -1 -5 -6 -3 -4 2 -5 -4 6 -3 2 -6 -1 -2 -7 -6 0
P -1 -11 -6 -4 -8 -7 -6 -8 -2 -6 -7 -3 7 -2 -6 -2 -5 -7 -11 -10
Q -6 -6 -1 4 -8 -8 -5 -7 -1 -7 -6 2 -2 8 0 -3 -1 -8 -7 -5
R -8 -7 -8 -4 -8 -8 -5 -10 -4 -8 -8 -6 -6 0 7 -8 -7 -10 -5 -6
S 0 -3 -2 -3 -6 -5 -6 -4 -1 -5 -3 -1 -2 -3 -8 5 -1 -3 -7 -4
T -1 -2 -2 -1 -6 -7 -7 -1 -1 -2 -1 -2 -5 -1 -7 -1 4 -1 -9 -6
V -2 -5 -8 -6 -4 -7 -11 1 -6 -2 0 -7 -7 -8 -10 -3 -1 5 -9 -7
W -10 -3 -9 -8 -5 -10 -12 -10 -10 -6 -6 -6 -11 -7 -5 -7 -9 -9 7 -5
Y -7 -6 -7 -6 0 -7 -3 -8 -6 -5 -6 0 -10 -5 -6 -4 -6 -7 -5 6

Blosum Log10 No Clustering

  A C D E F G H I K L M N P Q R S T V W Y
A 2 -2 -2 -2 -2 -1 -4 -1 -3 -1 0 -2 0 -3 -3 0 0 -1 -5 -3
C -2 3 -4 -5 -2 -3 -2 -3 -5 -2 -1 -3 -5 -3 -3 -1 -1 -2 -1 -3
D -2 -4 3 0 -4 -2 -1 -3 0 -4 -2 1 -3 -1 -4 -1 -1 -3 -4 -3
E -2 -5 0 4 -3 -2 -1 -2 1 -2 -2 -1 -2 2 -2 -1 -1 -3 -3 -2
F -2 -2 -4 -3 2 -3 -3 -2 -2 0 0 -2 -4 -3 -3 -3 -3 -2 -2 0
G -1 -3 -2 -2 -3 2 -4 -3 -3 -3 -3 -2 -3 -3 -3 -2 -3 -3 -4 -3
H -4 -2 -1 -1 -3 -4 3 -5 -2 -4 -4 -1 -3 -2 -2 -3 -3 -5 -5 -1
I -1 -3 -3 -2 -2 -3 -5 2 -2 0 0 -2 -3 -3 -4 -2 0 1 -4 -4
K -3 -5 0 1 -2 -3 -2 -2 4 -1 0 1 -1 0 -2 -1 0 -3 -4 -3
L -1 -2 -4 -2 0 -3 -4 0 -1 1 0 -2 -3 -3 -3 -2 -1 -1 -3 -2
M 0 -1 -2 -2 0 -3 -4 0 0 0 2 -2 -3 -3 -4 -1 -1 0 -2 -2
N -2 -3 1 -1 -2 -2 -1 -2 1 -2 -2 2 -1 1 -3 -1 -1 -3 -3 0
P 0 -5 -3 -2 -4 -3 -3 -3 -1 -3 -3 -1 3 -1 -3 -1 -2 -3 -5 -4
Q -3 -3 -1 2 -3 -3 -2 -3 0 -3 -3 1 -1 3 0 -2 -1 -3 -3 -2
R -3 -3 -4 -2 -3 -3 -2 -4 -2 -3 -4 -3 -3 0 3 -4 -3 -4 -2 -3
S 0 -1 -1 -1 -3 -2 -3 -2 -1 -2 -1 -1 -1 -2 -4 2 0 -2 -3 -2
T 0 -1 -1 -1 -3 -3 -3 0 0 -1 -1 -1 -2 -1 -3 0 2 0 -4 -3
V -1 -2 -3 -3 -2 -3 -5 1 -3 -1 0 -3 -3 -3 -4 -2 0 2 -4 -3
W -5 -1 -4 -3 -2 -4 -5 -4 -4 -3 -2 -3 -5 -3 -2 -3 -4 -4 3 -2
Y -3 -3 -3 -2 0 -3 -1 -4 -3 -2 -2 0 -4 -2 -3 -2 -3 -3 -2 2

Distance Log2

  A C D E F G H I K L M N P Q R S T V W Y
A 3 11 11 12 9 7 13 7 13 7 7 10 8 12 13 6 6 7 14 11
C 11 5 16 18 11 12 11 12 19 10 11 13 17 15 14 10 9 11 11 13
D 11 16 5 10 14 10 10 13 11 13 12 7 13 11 15 9 9 13 15 13
E 12 18 10 6 13 12 11 12 10 10 12 10 12 8 12 11 9 13 15 13
F 9 11 14 13 3 11 11 8 12 5 7 10 13 13 13 10 10 9 10 6
G 7 12 10 12 11 3 13 10 13 9 11 10 12 13 12 9 11 10 13 11
H 13 11 10 11 11 13 4 14 13 12 14 9 13 12 11 11 11 15 16 9
I 7 12 13 12 8 10 14 3 11 4 6 9 12 13 14 9 6 5 14 12
K 13 19 11 10 12 13 13 11 6 9 10 8 11 11 13 10 9 13 17 13
L 7 10 13 10 5 9 12 4 9 2 5 9 11 12 12 8 6 6 10 9
M 7 11 12 12 7 11 14 6 10 5 5 10 13 13 14 9 8 7 12 11
N 10 13 7 10 10 10 9 9 8 9 10 4 10 7 12 8 8 11 12 7
P 8 17 13 12 13 12 13 12 11 11 13 10 5 11 13 9 11 13 16 15
Q 12 15 11 8 13 13 12 13 11 12 13 7 11 6 9 11 9 14 14 12
R 13 14 15 12 13 12 11 14 13 12 14 12 13 9 4 13 12 15 12 12
S 6 10 9 11 10 9 11 9 10 8 9 8 9 11 13 3 6 9 12 9
T 6 9 9 9 10 11 11 6 9 6 8 8 11 9 12 6 3 7 13 10
V 7 11 13 13 9 10 15 5 13 6 7 11 13 14 15 9 7 4 13 11
W 14 11 15 15 10 13 16 14 17 10 12 12 16 14 12 12 13 13 4 11
Y 11 13 13 13 6 11 9 12 13 9 11 7 15 12 12 9 10 11 11 4

Distance LN

  A C D E F G H I K L M N P Q R S T V W Y
A 2 8 7 8 6 4 8 4 9 4 5 7 5 8 9 4 4 5 9 8
C 8 3 11 12 7 8 7 8 13 7 7 9 12 10 9 7 6 8 7 9
D 7 11 3 6 10 7 7 8 7 9 8 4 9 7 10 6 6 9 10 9
E 8 12 6 4 9 8 7 8 7 7 8 6 8 5 8 7 6 8 10 8
F 6 7 10 9 2 7 8 5 8 3 5 7 9 9 8 7 7 6 7 4
G 4 8 7 8 7 2 9 7 9 6 7 7 8 9 8 6 7 7 9 7
H 8 7 7 7 8 9 2 9 9 8 10 6 8 8 7 7 8 10 11 6
I 4 8 8 8 5 7 9 2 7 3 4 6 8 9 9 6 4 3 9 8
K 9 13 7 7 8 9 9 7 4 6 7 5 7 7 8 6 6 9 11 9
L 4 7 9 7 3 6 8 3 6 1 3 6 7 8 8 5 4 4 7 6
M 5 7 8 8 5 7 10 4 7 3 3 7 9 9 9 6 5 5 8 7
N 7 9 4 6 7 7 6 6 5 6 7 3 7 5 8 5 5 8 8 5
P 5 12 9 8 9 8 8 8 7 7 9 7 3 7 9 6 7 8 11 10
Q 8 10 7 5 9 9 8 9 7 8 9 5 7 4 6 7 6 9 9 8
R 9 9 10 8 8 8 7 9 8 8 9 8 9 6 3 9 8 10 8 8
S 4 7 6 7 7 6 7 6 6 5 6 5 6 7 9 2 4 6 8 6
T 4 6 6 6 7 7 8 4 6 4 5 5 7 6 8 4 2 4 9 7
V 5 8 9 8 6 7 10 3 9 4 5 8 8 9 10 6 4 2 9 7
W 9 7 10 10 7 9 11 9 11 7 8 8 11 9 8 8 9 9 2 7
Y 8 9 9 8 4 7 6 8 9 6 7 5 10 8 8 6 7 7 7 2

Distance Log10

  A C D E F G H I K L M N P Q R S T V W Y
A 0 3 3 3 2 1 3 1 3 1 1 2 2 3 3 1 1 1 4 3
C 3 1 4 5 2 3 3 3 5 2 3 3 5 4 3 2 2 3 3 3
D 3 4 1 2 4 2 2 3 3 3 3 1 3 2 4 2 2 3 4 3
E 3 5 2 1 3 3 3 3 2 2 3 2 3 2 3 3 2 3 4 3
F 2 2 4 3 0 3 3 2 3 1 1 2 3 3 3 2 2 2 2 1
G 1 3 2 3 3 0 3 2 3 2 3 2 3 3 3 2 2 2 3 3
H 3 3 2 3 3 3 0 4 3 3 4 2 3 3 3 3 3 4 4 2
I 1 3 3 3 2 2 4 0 3 1 1 2 3 3 4 2 1 1 3 3
K 3 5 3 2 3 3 3 3 1 2 2 2 3 3 3 2 2 3 4 3
L 1 2 3 2 1 2 3 1 2 0 1 2 3 3 3 2 1 1 2 2
M 1 3 3 3 1 3 4 1 2 1 1 2 3 3 4 2 2 1 3 3
N 2 3 1 2 2 2 2 2 2 2 2 1 2 2 3 2 2 3 3 1
P 2 5 3 3 3 3 3 3 3 3 3 2 1 2 3 2 3 3 4 4
Q 3 4 2 2 3 3 3 3 3 3 3 2 2 1 2 2 2 3 3 3
R 3 3 4 3 3 3 3 4 3 3 4 3 3 2 1 3 3 4 3 3
S 1 2 2 3 2 2 3 2 2 2 2 2 2 2 3 0 1 2 3 2
T 1 2 2 2 2 2 3 1 2 1 2 2 3 2 3 1 0 1 3 2
V 1 3 3 3 2 2 4 1 3 1 1 3 3 3 4 2 1 0 3 3
W 4 3 4 4 2 3 4 3 4 2 3 3 4 3 3 3 3 3 0 3
Y 3 3 3 3 1 3 2 3 3 2 3 1 4 3 3 2 2 3 3 0

Observed Probability of Transition

  A C D E F G H I K L M N P Q R S T V W Y
A 5.46973% 0.01849% 0.02139% 0.01628% 0.07091% 0.48733% 0.00820% 0.49743% 0.00623% 0.47163% 0.38061% 0.04179% 0.25006% 0.01240% 0.00711% 0.81186% 0.85965% 0.33714% 0.00289% 0.01847%
C 0.01849% 1.49753% 0.00059% 0.00014% 0.03241% 0.00905% 0.02126% 0.01444% 0.00012% 0.04989% 0.03089% 0.00567% 0.00030% 0.00202% 0.00321% 0.05009% 0.07893% 0.01733% 0.02287% 0.00712%
D 0.02139% 0.00059% 1.50065% 0.05859% 0.00267% 0.04096% 0.04540% 0.00756% 0.02152% 0.00608% 0.01319% 0.41575% 0.00522% 0.03208% 0.00162% 0.07441% 0.11802% 0.00484% 0.00169% 0.00648%
E 0.01628% 0.00014% 0.05859% 0.89807% 0.00589% 0.01314% 0.02345% 0.01381% 0.04711% 0.04932% 0.00988% 0.05746% 0.00898% 0.25176% 0.00993% 0.03127% 0.10734% 0.00812% 0.00166% 0.00805%
F 0.07091% 0.03241% 0.00267% 0.00589% 6.49742% 0.02735% 0.02004% 0.18296% 0.01696% 1.55766% 0.36245% 0.05482% 0.00585% 0.00580% 0.00819% 0.04618% 0.05493% 0.12429% 0.04231% 0.75255%
G 0.48733% 0.00905% 0.04096% 0.01314% 0.02735% 8.14029% 0.00726% 0.03750% 0.00521% 0.08497% 0.02810% 0.04531% 0.01445% 0.00602% 0.00884% 0.09116% 0.03385% 0.03754% 0.00459% 0.02152%
H 0.00820% 0.02126% 0.04540% 0.02345% 0.02004% 0.00726% 3.93104% 0.00289% 0.00580% 0.01561% 0.00230% 0.06966% 0.00832% 0.01220% 0.02067% 0.02248% 0.01959% 0.00172% 0.00069% 0.08145%
I 0.49743% 0.01444% 0.00756% 0.01381% 0.18296% 0.03750% 0.00289% 5.21914% 0.02814% 2.38669% 0.73348% 0.09863% 0.00890% 0.00686% 0.00291% 0.12226% 0.86926% 2.04445% 0.00368% 0.01489%
K 0.00623% 0.00012% 0.02152% 0.04711% 0.01696% 0.00521% 0.00580% 0.02814% 0.64415% 0.08591% 0.05155% 0.18212% 0.02076% 0.02258% 0.00815% 0.05722% 0.09176% 0.00583% 0.00050% 0.00531%
L 0.47163% 0.04989% 0.00608% 0.04932% 1.55766% 0.08497% 0.01561% 2.38669% 0.08591% 9.83360% 1.11623% 0.09956% 0.02993% 0.01318% 0.01593% 0.17016% 0.86986% 0.75164% 0.04824% 0.10047%
M 0.38061% 0.03089% 0.01319% 0.00988% 0.36245% 0.02810% 0.00230% 0.73348% 0.05155% 1.11623% 1.93986% 0.04990% 0.00623% 0.00605% 0.00309% 0.08795% 0.27577% 0.39176% 0.01608% 0.02216%
N 0.04179% 0.00567% 0.41575% 0.05746% 0.05482% 0.04531% 0.06966% 0.09863% 0.18212% 0.09956% 0.04990% 2.99032% 0.05170% 0.27950% 0.01125% 0.26738% 0.25287% 0.01913% 0.01418% 0.38951%
P 0.25006% 0.00030% 0.00522% 0.00898% 0.00585% 0.01445% 0.00832% 0.00890% 0.02076% 0.02993% 0.00623% 0.05170% 2.10847% 0.03203% 0.00615% 0.08649% 0.03038% 0.00754% 0.00085% 0.00160%
Q 0.01240% 0.00202% 0.03208% 0.25176% 0.00580% 0.00602% 0.01220% 0.00686% 0.02258% 0.01318% 0.00605% 0.27950% 0.03203% 1.07846% 0.07446% 0.03336% 0.11983% 0.00391% 0.00389% 0.01465%
R 0.00711% 0.00321% 0.00162% 0.00993% 0.00819% 0.00884% 0.02067% 0.00291% 0.00815% 0.01593% 0.00309% 0.01125% 0.00615% 0.07446% 2.41986% 0.00467% 0.01113% 0.00174% 0.01471% 0.01262%
S 0.81186% 0.05009% 0.07441% 0.03127% 0.04618% 0.09116% 0.02248% 0.12226% 0.05722% 0.17016% 0.08795% 0.26738% 0.08649% 0.03336% 0.00467% 4.65181% 0.68346% 0.13071% 0.01178% 0.07043%
T 0.85965% 0.07893% 0.11802% 0.10734% 0.05493% 0.03385% 0.01959% 0.86926% 0.09176% 0.86986% 0.27577% 0.25287% 0.03038% 0.11983% 0.01113% 0.68346% 5.16555% 0.54620% 0.00515% 0.03755%
V 0.33714% 0.01733% 0.00484% 0.00812% 0.12429% 0.03754% 0.00172% 2.04445% 0.00583% 0.75164% 0.39176% 0.01913% 0.00754% 0.00391% 0.00174% 0.13071% 0.54620% 3.87432% 0.00454% 0.02201%
W 0.00289% 0.02287% 0.00169% 0.00166% 0.04231% 0.00459% 0.00069% 0.00368% 0.00050% 0.04824% 0.01608% 0.01418% 0.00085% 0.00389% 0.01471% 0.01178% 0.00515% 0.00454% 3.46966% 0.03144%
Y 0.01847% 0.00712% 0.00648% 0.00805% 0.75255% 0.02152% 0.08145% 0.01489% 0.00531% 0.10047% 0.02216% 0.38951% 0.00160% 0.01465% 0.01262% 0.07043% 0.03755% 0.02201% 0.03144% 4.33280%

Expected Probability of Transition

  A C D E F G H I K L M N P Q R S T V W Y
A 0.58212% 0.25635% 0.29599% 0.19214% 1.24892% 1.31878% 0.62954% 1.33635% 0.14886% 2.10505% 0.56974% 0.63989% 0.36567% 0.23572% 0.38653% 0.92754% 1.17472% 0.93152% 0.54714% 0.78463%
C 0.25635% 0.02822% 0.06517% 0.04230% 0.27499% 0.29038% 0.13861% 0.29425% 0.03277% 0.46351% 0.12545% 0.14089% 0.08051% 0.05190% 0.08511% 0.20423% 0.25866% 0.20511% 0.12047% 0.17276%
D 0.29599% 0.06517% 0.03762% 0.04885% 0.31751% 0.33527% 0.16005% 0.33974% 0.03784% 0.53517% 0.14484% 0.16268% 0.09296% 0.05993% 0.09827% 0.23581% 0.29865% 0.23682% 0.13910% 0.19948%
E 0.19214% 0.04230% 0.04885% 0.01585% 0.20612% 0.21765% 0.10389% 0.22055% 0.02456% 0.34741% 0.09403% 0.10560% 0.06035% 0.03890% 0.06379% 0.15308% 0.19387% 0.15373% 0.09030% 0.12949%
F 1.24892% 0.27499% 0.31751% 0.20612% 0.66987% 1.41469% 0.67532% 1.43354% 0.15969% 2.25814% 0.61118% 0.68643% 0.39226% 0.25287% 0.41464% 0.99500% 1.26015% 0.99926% 0.58693% 0.84170%
G 1.31878% 0.29038% 0.33527% 0.21765% 1.41469% 0.74691% 0.71310% 1.51372% 0.16862% 2.38446% 0.64537% 0.72483% 0.41420% 0.26701% 0.43784% 1.05066% 1.33064% 1.05516% 0.61976% 0.88878%
H 0.62954% 0.13861% 0.16005% 0.10389% 0.67532% 0.71310% 0.17020% 0.72260% 0.08049% 1.13826% 0.30807% 0.34601% 0.19772% 0.12746% 0.20901% 0.50155% 0.63520% 0.50370% 0.29585% 0.42427%
I 1.33635% 0.29425% 0.33974% 0.22055% 1.43354% 1.51372% 0.72260% 0.76694% 0.17087% 2.41623% 0.65396% 0.73449% 0.41972% 0.27057% 0.44367% 1.06466% 1.34837% 1.06922% 0.62802% 0.90062%
K 0.14886% 0.03277% 0.03784% 0.02456% 0.15969% 0.16862% 0.08049% 0.17087% 0.00951% 0.26916% 0.07285% 0.08182% 0.04675% 0.03014% 0.04942% 0.11860% 0.15020% 0.11911% 0.06996% 0.10032%
L 2.10505% 0.46351% 0.53517% 0.34741% 2.25814% 2.38446% 1.13826% 2.41623% 0.26916% 1.90305% 1.03014% 1.15698% 0.66116% 0.42621% 0.69888% 1.67707% 2.12399% 1.68426% 0.98927% 1.41868%
M 0.56974% 0.12545% 0.14484% 0.09403% 0.61118% 0.64537% 0.30807% 0.65396% 0.07285% 1.03014% 0.13940% 0.31314% 0.17894% 0.11535% 0.18915% 0.45391% 0.57487% 0.45585% 0.26775% 0.38397%
N 0.63989% 0.14089% 0.16268% 0.10560% 0.68643% 0.72483% 0.34601% 0.73449% 0.08182% 1.15698% 0.31314% 0.17585% 0.20098% 0.12956% 0.21244% 0.50980% 0.64565% 0.51198% 0.30072% 0.43125%
P 0.36567% 0.08051% 0.09296% 0.06035% 0.39226% 0.41420% 0.19772% 0.41972% 0.04675% 0.66116% 0.17894% 0.20098% 0.05742% 0.07403% 0.12140% 0.29132% 0.36896% 0.29257% 0.17184% 0.24644%
Q 0.23572% 0.05190% 0.05993% 0.03890% 0.25287% 0.26701% 0.12746% 0.27057% 0.03014% 0.42621% 0.11535% 0.12956% 0.07403% 0.02386% 0.07826% 0.18780% 0.23784% 0.18860% 0.11078% 0.15886%
R 0.38653% 0.08511% 0.09827% 0.06379% 0.41464% 0.43784% 0.20901% 0.44367% 0.04942% 0.69888% 0.18915% 0.21244% 0.12140% 0.07826% 0.06416% 0.30794% 0.39001% 0.30926% 0.18165% 0.26050%
S 0.92754% 0.20423% 0.23581% 0.15308% 0.99500% 1.05066% 0.50155% 1.06466% 0.11860% 1.67707% 0.45391% 0.50980% 0.29132% 0.18780% 0.30794% 0.36948% 0.93589% 0.74213% 0.43590% 0.62511%
T 1.17472% 0.25866% 0.29865% 0.19387% 1.26015% 1.33064% 0.63520% 1.34837% 0.15020% 2.12399% 0.57487% 0.64565% 0.36896% 0.23784% 0.39001% 0.93589% 0.59264% 0.93990% 0.55206% 0.79169%
V 0.93152% 0.20511% 0.23682% 0.15373% 0.99926% 1.05516% 0.50370% 1.06922% 0.11911% 1.68426% 0.45585% 0.51198% 0.29257% 0.18860% 0.30926% 0.74213% 0.93990% 0.37265% 0.43777% 0.62779%
W 0.54714% 0.12047% 0.13910% 0.09030% 0.58693% 0.61976% 0.29585% 0.62802% 0.06996% 0.98927% 0.26775% 0.30072% 0.17184% 0.11078% 0.18165% 0.43590% 0.55206% 0.43777% 0.12856% 0.36874%
Y 0.78463% 0.17276% 0.19948% 0.12949% 0.84170% 0.88878% 0.42427% 0.90062% 0.10032% 1.41868% 0.38397% 0.43125% 0.24644% 0.15886% 0.26050% 0.62511% 0.79169% 0.62779% 0.36874% 0.26440%

Transition Count

  A C D E F G H I K L M N P Q R S T V W Y
A 1258826629X 4255743 4924225 3747022 16320603 112156870 1889084 114482688 1434991 108542907 87596446 9619299 57550157 2854763 1636792 186844948 197845054 77590961 667226 4252002
C 4255743 344648272 136571 33206 7459000 2084666 4893249 3324946 28668 11482560 7109045 1306545 70000 464977 740597 11529311 18166697 3989467 5264552 1640172
D 4924225 136571 345367753 13485167 615461 9426759 10449471 1741905 4952972 1401153 3036194 95682607 1202603 7384803 372764 17126994 27161682 1115896 390656 1491978
E 3747022 33206 13485167 206686959 1356533 3024946 5397114 3178182 10843551 11351421 2275720 13224742 2067769 57942613 2286145 7197381 24703976 1870549 383426 1854094
F 16320603 7459000 615461 1356533 1495343190X 6295602 4614033 42108892 3904622 358488048 83417255 12616802 1346864 1335730 1886034 10630118 12643880 28605768 9738133 173196504
G 112156870 2084666 9426759 3024946 6295602 1873440891X 1672707 8632031 1198994 19555661 6467381 10427793 3325763 1385906 2035983 20982026 7790895 8639677 1057954 4954516
H 1889084 4893249 10449471 5397114 4614033 1672707 904707038 665297 1336270 3593261 531228 16032782 1915878 2809704 4758529 5174747 4510450 396223 159586 18746362
I 114482688 3324946 1741905 3178182 42108892 8632031 665297 1201155295X 6477946 549283443 168806590 22701180 2049211 1579195 670956 28138346 200055625 470518492 847522 3427327
K 1434991 28668 4952972 10843551 3904622 1198994 1336270 6477946 148247714 19772186 11865377 41915456 4778356 5198612 1876603 13169086 21118558 1342108 115010 1223842
L 108542907 11482560 1401153 11351421 358488048 19555661 3593261 549283443 19772186 > 2 Billion 256894671 22915158 6888616 3034085 3667136 39162084 200194459 172985429 11104277 23124727
M 87596446 7109045 3036194 2275720 83417255 6467381 531228 168806590 11865377 256894671 446449196 11484404 1434057 1393545 711985 20242701 63467941 90162148 3700634 5100543
N 9619299 1306545 95682607 13224742 12616802 10427793 16032782 22701180 41915456 22915158 11484404 688204413 11899066 64325542 2590278 61537162 58197296 4403619 3265458 89645066
P 57550157 70000 1202603 2067769 1346864 3325763 1915878 2049211 4778356 6888616 1434057 11899066 485253126 7372248 1416581 19905198 6992195 1735906 197557 368287
Q 2854763 464977 7384803 57942613 1335730 1385906 2809704 1579195 5198612 3034085 1393545 64325542 7372248 248202912 17137722 7678083 27578465 901997 895225 3372088
R 1636792 740597 372764 2286145 1886034 2035983 4758529 670956 1876603 3667136 711985 2590278 1416581 17137722 556916309 1075311 2562577 401010 3386792 2905129
S 186844948 11529311 17126994 7197381 10630118 20982026 5174747 28138346 13169086 39162084 20242701 61537162 19905198 7678083 1075311 1070587007n 157295652 30082116 2713157 16210248
T 197845054 18166697 27161682 24703976 12643880 7790895 4510450 200055625 21118558 200194459 63467941 58197296 6992195 27578465 2562577 157295652 1188821874n 125705709 1187174 8642624
V 77590961 3989467 1115896 1870549 28605768 8639677 396223 470518492 1342108 172985429 90162148 4403619 1735906 901997 401010 30082116 125705709 891651749 1047000 5066542
W 667226 5264552 390656 383426 9738133 1057954 159586 847522 115010 11104277 3700634 3265458 197557 895225 3386792 2713157 1187174 1047000 798522378 7236652
Y 4252002 1640172 1491978 1854094 173196504 4954516 18746362 3427327 1223842 23124727 5100543 89645066 368287 3372088 2905129 16210248 8642624 5066542 7236652 997169651

Number of Amino Acids in Alignment

  A C D E F G H I K L M N P Q R S T V W Y
A 229943 - - - - - - - - - - - - - - - - - - -
C - 46996 - - - - - - - - - - - - - - - - - -
D - - 60592 - - - - - - - - - - - - - - - - -
E - - - 37383 - - - - - - - - - - - - - - - -
F - - - - 245095 - - - - - - - - - - - - - - -
G - - - - - 252847 - - - - - - - - - - - - - -
H - - - - - - 123877 - - - - - - - - - - - - -
I - - - - - - - 266293 - - - - - - - - - - - -
K - - - - - - - - 35974 - - - - - - - - - - -
L - - - - - - - - - 418173 - - - - - - - - - -
M - - - - - - - - - - 113005 - - - - - - - - -
N - - - - - - - - - - - 132865 - - - - - - - -
P - - - - - - - - - - - - 83745 - - - - - - -
Q - - - - - - - - - - - - - 47504 - - - - - -
R - - - - - - - - - - - - - - 74591 - - - - -
S - - - - - - - - - - - - - - - 187773 - - - -
T - - - - - - - - - - - - - - - - 233264 - - -
V - - - - - - - - - - - - - - - - - 181256 - -
W - - - - - - - - - - - - - - - - - - 112971 -
Y - - - - - - - - - - - - - - - - - - - 142008

Percentage of Amino Acids in Alignment

  A C D E F G H I K L M N P Q R S T V W Y
A 7.59% - - - - - - - - - - - - - - - - - - -
C - 1.55% - - - - - - - - - - - - - - - - - -
D - - 2.00% - - - - - - - - - - - - - - - - -
E - - - 1.23% - - - - - - - - - - - - - - - -
F - - - - 8.09% - - - - - - - - - - - - - - -
G - - - - - 8.35% - - - - - - - - - - - - - -
H - - - - - - 4.09% - - - - - - - - - - - - -
I - - - - - - - 8.79% - - - - - - - - - - - -
K - - - - - - - - 1.18% - - - - - - - - - - -
L - - - - - - - - - 13.8% - - - - - - - - - -
M - - - - - - - - - - 3.73% - - - - - - - - -
N - - - - - - - - - - - 4.39% - - - - - - - -
P - - - - - - - - - - - - 2.76% - - - - - - -
Q - - - - - - - - - - - - - 1.56% - - - - - -
R - - - - - - - - - - - - - - 2.46% - - - - -
S - - - - - - - - - - - - - - - 6.20% - - - -
T - - - - - - - - - - - - - - - - 7.70% - - -
V - - - - - - - - - - - - - - - - - 5.98% - -
W - - - - - - - - - - - - - - - - - - 3.73% -
Y - - - - - - - - - - - - - - - - - - - 4.69%