Blosum Log2 No Clustering

  A C D E F G H I K L M N P Q R S T V W Y
A 7 -15 -3 -1 -12 -4 -6 -7 -3 -7 -5 -6 -4 -4 -4 -2 1 1 -10 -8
C -15 10 -16 -14 -12 -13 -13 -17 -16 -15 -13 -14 -10 -13 -10 -10 -14 -15 -7 -6
D -3 -16 8 2 -12 -3 -5 -8 -1 -9 -5 1 -7 -2 -5 -3 -4 -6 -7 -6
E -1 -14 2 7 -10 -2 -4 -7 2 -8 -5 -2 -7 0 -2 -3 -2 -3 -7 -4
F -12 -12 -12 -10 9 -10 -5 -3 -9 1 -3 -8 -5 -12 -9 -7 -8 -4 1 1
G -4 -13 -3 -2 -10 7 -7 -8 -3 -9 -5 -3 -6 -5 -2 -1 -5 -6 -6 -8
H -6 -13 -5 -4 -5 -7 9 -8 -4 -4 -2 -2 0 3 -1 -1 -4 -8 0 5
I -7 -17 -8 -7 -3 -8 -8 5 -6 -1 2 -8 -5 -8 -6 -6 -2 1 -10 -7
K -3 -16 -1 2 -9 -3 -4 -6 6 -5 -4 -1 -7 2 1 -4 -1 -3 -8 -5
L -7 -15 -9 -8 1 -9 -4 -1 -5 8 1 -9 -2 -3 -5 -7 -7 -2 -5 -5
M -5 -13 -5 -5 -3 -5 -2 2 -4 1 11 -5 -7 -5 -2 -5 1 0 -7 -4
N -6 -14 1 -2 -8 -3 -2 -8 -1 -9 -5 5 -6 -4 -5 -1 -2 -5 -4 -3
P -4 -10 -7 -7 -5 -6 0 -5 -7 -2 -7 -6 9 -2 -5 0 -4 -8 -5 -5
Q -4 -13 -2 0 -12 -5 3 -8 2 -3 -5 -4 -2 7 0 -4 -6 -6 -5 -3
R -4 -10 -5 -2 -9 -2 -1 -6 1 -5 -2 -5 -5 0 7 -2 -4 -4 -7 -5
S -2 -10 -3 -3 -7 -1 -1 -6 -4 -7 -5 -1 0 -4 -2 7 0 -4 -2 -5
T 1 -14 -4 -2 -8 -5 -4 -2 -1 -7 1 -2 -4 -6 -4 0 6 -2 -6 -6
V 1 -15 -6 -3 -4 -6 -8 1 -3 -2 0 -5 -8 -6 -4 -4 -2 7 -8 -3
W -10 -7 -7 -7 1 -6 0 -10 -8 -5 -7 -4 -5 -5 -7 -2 -6 -8 12 -1
Y -8 -6 -6 -4 1 -8 5 -7 -5 -5 -4 -3 -5 -3 -5 -5 -6 -3 -1 10

Blosum LN No Clustering

  A C D E F G H I K L M N P Q R S T V W Y
A 5 -11 -2 -1 -9 -3 -4 -5 -2 -5 -4 -4 -3 -3 -3 -1 1 1 -7 -6
C -11 7 -11 -10 -9 -9 -9 -12 -11 -10 -9 -10 -7 -9 -7 -7 -10 -10 -5 -4
D -2 -11 6 1 -8 -2 -3 -6 -1 -7 -4 1 -5 -1 -4 -2 -3 -4 -5 -4
E -1 -10 1 5 -7 -1 -3 -5 1 -6 -3 -1 -5 0 -2 -2 -2 -2 -5 -3
F -9 -9 -8 -7 6 -7 -4 -2 -6 1 -2 -6 -3 -8 -6 -5 -6 -3 0 1
G -3 -9 -2 -1 -7 5 -5 -5 -2 -6 -3 -2 -4 -3 -1 -1 -3 -4 -4 -5
H -4 -9 -3 -3 -4 -5 6 -5 -3 -3 -1 -1 0 2 -1 -1 -3 -5 0 3
I -5 -12 -6 -5 -2 -5 -5 4 -4 -1 1 -5 -4 -6 -4 -4 -2 1 -7 -5
K -2 -11 -1 1 -6 -2 -3 -4 4 -3 -3 -1 -5 1 1 -3 -1 -2 -6 -4
L -5 -10 -7 -6 1 -6 -3 -1 -3 6 0 -7 -1 -2 -4 -5 -5 -1 -3 -3
M -4 -9 -4 -3 -2 -3 -1 1 -3 0 7 -4 -5 -3 -1 -3 1 0 -5 -3
N -4 -10 1 -1 -6 -2 -1 -5 -1 -7 -4 4 -4 -3 -4 -1 -1 -4 -3 -2
P -3 -7 -5 -5 -3 -4 0 -4 -5 -1 -5 -4 6 -1 -4 0 -3 -6 -4 -4
Q -3 -9 -1 0 -8 -3 2 -6 1 -2 -3 -3 -1 5 0 -3 -4 -4 -3 -2
R -3 -7 -4 -2 -6 -1 -1 -4 1 -4 -1 -4 -4 0 5 -2 -3 -3 -5 -3
S -1 -7 -2 -2 -5 -1 -1 -4 -3 -5 -3 -1 0 -3 -2 5 0 -3 -2 -4
T 1 -10 -3 -2 -6 -3 -3 -2 -1 -5 1 -1 -3 -4 -3 0 4 -1 -4 -4
V 1 -10 -4 -2 -3 -4 -5 1 -2 -1 0 -4 -6 -4 -3 -3 -1 5 -6 -2
W -7 -5 -5 -5 0 -4 0 -7 -6 -3 -5 -3 -4 -3 -5 -2 -4 -6 8 -1
Y -6 -4 -4 -3 1 -5 3 -5 -4 -3 -3 -2 -4 -2 -3 -4 -4 -2 -1 7

Blosum Log10 No Clustering

  A C D E F G H I K L M N P Q R S T V W Y
A 2 -5 -1 0 -4 -1 -2 -2 -1 -2 -2 -2 -1 -1 -1 -1 0 0 -3 -2
C -5 3 -5 -4 -4 -4 -4 -5 -5 -5 -4 -4 -3 -4 -3 -3 -4 -4 -2 -2
D -1 -5 3 1 -4 -1 -2 -2 0 -3 -2 0 -2 0 -2 -1 -1 -2 -2 -2
E 0 -4 1 2 -3 -1 -1 -2 0 -2 -1 -1 -2 0 -1 -1 -1 -1 -2 -1
F -4 -4 -4 -3 3 -3 -2 -1 -3 0 -1 -2 -1 -4 -3 -2 -3 -1 0 0
G -1 -4 -1 -1 -3 2 -2 -2 -1 -3 -1 -1 -2 -1 -1 0 -1 -2 -2 -2
H -2 -4 -2 -1 -2 -2 3 -2 -1 -1 -1 -1 0 1 0 0 -1 -2 0 1
I -2 -5 -2 -2 -1 -2 -2 2 -2 0 1 -2 -2 -2 -2 -2 -1 0 -3 -2
K -1 -5 0 0 -3 -1 -1 -2 2 -1 -1 0 -2 1 0 -1 0 -1 -3 -2
L -2 -5 -3 -2 0 -3 -1 0 -1 2 0 -3 0 -1 -2 -2 -2 -1 -1 -1
M -2 -4 -2 -1 -1 -1 -1 1 -1 0 3 -2 -2 -2 0 -1 0 0 -2 -1
N -2 -4 0 -1 -2 -1 -1 -2 0 -3 -2 2 -2 -1 -2 0 -1 -2 -1 -1
P -1 -3 -2 -2 -1 -2 0 -2 -2 0 -2 -2 3 -1 -2 0 -1 -2 -2 -2
Q -1 -4 0 0 -4 -1 1 -2 1 -1 -2 -1 -1 2 0 -1 -2 -2 -2 -1
R -1 -3 -2 -1 -3 -1 0 -2 0 -2 0 -2 -2 0 2 -1 -1 -1 -2 -1
S -1 -3 -1 -1 -2 0 0 -2 -1 -2 -1 0 0 -1 -1 2 0 -1 -1 -2
T 0 -4 -1 -1 -3 -1 -1 -1 0 -2 0 -1 -1 -2 -1 0 2 0 -2 -2
V 0 -4 -2 -1 -1 -2 -2 0 -1 -1 0 -2 -2 -2 -1 -1 0 2 -3 -1
W -3 -2 -2 -2 0 -2 0 -3 -3 -1 -2 -1 -2 -2 -2 -1 -2 -3 3 0
Y -2 -2 -2 -1 0 -2 1 -2 -2 -1 -1 -1 -2 -1 -1 -2 -2 -1 0 3

Distance Log2

  A C D E F G H I K L M N P Q R S T V W Y
A 4 15 9 7 13 8 11 9 8 10 12 8 9 9 8 7 5 6 13 12
C 15 4 16 15 14 13 15 15 15 15 16 13 13 14 12 12 14 15 13 12
D 9 16 5 7 14 8 11 10 8 12 13 6 12 8 10 9 9 11 13 12
E 7 15 7 4 12 7 10 9 6 11 11 6 11 7 7 8 7 8 12 10
F 13 14 14 12 4 12 11 7 11 7 11 10 10 13 11 10 10 9 9 8
G 8 13 8 7 12 3 11 9 7 11 11 6 10 9 7 7 8 9 11 11
H 11 15 11 10 11 11 6 11 10 10 11 8 8 7 8 9 9 12 10 7
I 9 15 10 9 7 9 11 3 8 6 7 8 9 10 8 8 6 5 12 10
K 8 15 8 6 11 7 10 8 4 9 11 6 10 6 5 8 6 8 12 10
L 10 15 12 11 7 11 10 6 9 4 9 10 8 9 9 10 10 8 11 10
M 12 16 13 11 11 11 11 7 11 9 7 10 13 12 9 11 8 9 14 12
N 8 13 6 6 10 6 8 8 6 10 10 3 9 8 8 6 6 8 9 8
P 9 13 12 11 10 10 8 9 10 8 13 9 4 8 9 7 8 11 12 11
Q 9 14 8 7 13 9 7 10 6 9 12 8 8 4 6 9 9 10 11 10
R 8 12 10 7 11 7 8 8 5 9 9 8 9 6 3 7 7 8 12 10
S 7 12 9 8 10 7 9 8 8 10 11 6 7 9 7 4 6 9 10 10
T 5 14 9 7 10 8 9 6 6 10 8 6 8 9 7 6 3 7 11 10
V 6 15 11 8 9 9 12 5 8 8 9 8 11 10 8 9 7 4 13 10
W 13 13 13 12 9 11 10 12 12 11 14 9 12 11 12 10 11 13 5 10
Y 12 12 12 10 8 11 7 10 10 10 12 8 11 10 10 10 10 10 10 5

Distance LN

  A C D E F G H I K L M N P Q R S T V W Y
A 3 10 6 5 9 5 7 6 5 7 8 6 6 6 5 5 3 4 9 8
C 10 3 11 10 9 9 10 10 10 10 11 9 9 10 8 8 9 10 8 8
D 6 11 3 4 9 5 7 7 5 8 8 4 8 6 6 6 6 7 8 8
E 5 10 4 3 8 5 7 6 4 7 8 4 7 4 5 5 5 5 8 7
F 9 9 9 8 3 8 7 5 7 4 7 7 7 9 7 7 7 6 6 5
G 5 9 5 5 8 2 7 6 5 7 7 4 6 6 4 4 5 6 7 8
H 7 10 7 7 7 7 4 7 6 7 8 5 6 4 5 6 6 8 7 5
I 6 10 7 6 5 6 7 1 5 4 4 5 6 6 5 5 4 3 8 7
K 5 10 5 4 7 5 6 5 3 6 7 4 7 4 3 5 4 5 8 7
L 7 10 8 7 4 7 7 4 6 2 6 7 5 6 6 7 6 5 7 7
M 8 11 8 8 7 7 8 4 7 6 5 7 9 8 6 7 5 6 10 8
N 6 9 4 4 7 4 5 5 4 7 7 2 6 5 5 4 4 5 6 5
P 6 9 8 7 7 6 6 6 7 5 9 6 3 5 6 5 5 7 8 7
Q 6 10 6 4 9 6 4 6 4 6 8 5 5 3 4 6 6 7 7 6
R 5 8 6 5 7 4 5 5 3 6 6 5 6 4 2 5 5 5 8 7
S 5 8 6 5 7 4 6 5 5 7 7 4 5 6 5 2 4 6 6 7
T 3 9 6 5 7 5 6 4 4 6 5 4 5 6 5 4 2 4 7 7
V 4 10 7 5 6 6 8 3 5 5 6 5 7 7 5 6 4 3 8 6
W 9 8 8 8 6 7 7 8 8 7 10 6 8 7 8 6 7 8 3 7
Y 8 8 8 7 5 8 5 7 7 7 8 5 7 6 7 7 7 6 7 3

Distance Log10

  A C D E F G H I K L M N P Q R S T V W Y
A 1 4 2 2 3 2 3 2 2 2 3 2 2 2 2 2 1 1 3 3
C 4 1 4 4 4 3 4 4 4 4 4 3 3 4 3 3 3 4 3 3
D 2 4 1 1 3 2 3 2 2 3 3 1 3 2 2 2 2 2 3 3
E 2 4 1 1 3 1 2 2 1 3 3 1 2 1 2 2 1 2 3 2
F 3 4 3 3 1 3 3 1 3 1 3 2 2 3 3 2 2 2 2 2
G 2 3 2 1 3 0 3 2 2 2 3 1 2 2 1 1 2 2 3 3
H 3 4 3 2 3 3 1 2 2 2 3 2 2 1 2 2 2 3 2 1
I 2 4 2 2 1 2 2 0 2 1 1 2 2 2 2 2 1 1 3 2
K 2 4 2 1 3 2 2 2 1 2 3 1 2 1 1 2 1 2 3 2
L 2 4 3 3 1 2 2 1 2 0 2 2 2 2 2 2 2 2 3 2
M 3 4 3 3 3 3 3 1 3 2 1 2 3 3 2 3 2 2 4 3
N 2 3 1 1 2 1 2 2 1 2 2 0 2 2 2 1 1 2 2 2
P 2 3 3 2 2 2 2 2 2 2 3 2 1 2 2 1 2 3 3 3
Q 2 4 2 1 3 2 1 2 1 2 3 2 2 1 1 2 2 2 3 2
R 2 3 2 2 3 1 2 2 1 2 2 2 2 1 0 1 2 2 3 2
S 2 3 2 2 2 1 2 2 2 2 3 1 1 2 1 0 1 2 2 2
T 1 3 2 1 2 2 2 1 1 2 2 1 2 2 2 1 0 1 3 2
V 1 4 2 2 2 2 3 1 2 2 2 2 3 2 2 2 1 1 3 2
W 3 3 3 3 2 3 2 3 3 3 4 2 3 3 3 2 3 3 1 2
Y 3 3 3 2 2 3 1 2 2 2 3 2 3 2 2 2 2 2 2 1

Observed Probability of Transition

  A C D E F G H I K L M N P Q R S T V W Y
A 2.95214% 0.00140% 0.09257% 0.27901% 0.00501% 0.17470% 0.02264% 0.09478% 0.22687% 0.03679% 0.01494% 0.14965% 0.07279% 0.08810% 0.17130% 0.28994% 1.19814% 0.60854% 0.00449% 0.01030%
C 0.00140% 2.93709% 0.00061% 0.00205% 0.00315% 0.00514% 0.00159% 0.00182% 0.00129% 0.00145% 0.00059% 0.00436% 0.00565% 0.00270% 0.01064% 0.00947% 0.00384% 0.00190% 0.00764% 0.01616%
D 0.09257% 0.00061% 1.56000% 0.51650% 0.00367% 0.15570% 0.02085% 0.03836% 0.24446% 0.01001% 0.00830% 1.03201% 0.01654% 0.14406% 0.06537% 0.10480% 0.12813% 0.03197% 0.00766% 0.01451%
E 0.27901% 0.00205% 0.51650% 2.64313% 0.01240% 0.39055% 0.05299% 0.10741% 1.04497% 0.02785% 0.01797% 0.56563% 0.03244% 0.42879% 0.30622% 0.18199% 0.36908% 0.18220% 0.01395% 0.04173%
F 0.00501% 0.00315% 0.00367% 0.01240% 2.95407% 0.01508% 0.02373% 0.31649% 0.02253% 0.49048% 0.02465% 0.04645% 0.04883% 0.00573% 0.02435% 0.03601% 0.03702% 0.08385% 0.13683% 0.22330%
G 0.17470% 0.00514% 0.15570% 0.39055% 0.01508% 5.57339% 0.02491% 0.11619% 0.30905% 0.03415% 0.02646% 0.59986% 0.06160% 0.11840% 0.52403% 0.52285% 0.24511% 0.08122% 0.02865% 0.01795%
H 0.02264% 0.00159% 0.02085% 0.05299% 0.02373% 0.02491% 1.05357% 0.03368% 0.06808% 0.04448% 0.01902% 0.22111% 0.14915% 0.47165% 0.19547% 0.13560% 0.09278% 0.01465% 0.05328% 0.40024%
I 0.09478% 0.00182% 0.03836% 0.10741% 0.31649% 0.11619% 0.03368% 8.72265% 0.16151% 0.74266% 0.43398% 0.18541% 0.13266% 0.05868% 0.18654% 0.15585% 0.89173% 1.72593% 0.01133% 0.03821%
K 0.22687% 0.00129% 0.24446% 1.04497% 0.02253% 0.30905% 0.06808% 0.16151% 2.96893% 0.10151% 0.02639% 0.98850% 0.04278% 1.04182% 1.11382% 0.18108% 0.66067% 0.18304% 0.00979% 0.03786%
L 0.03679% 0.00145% 0.01001% 0.02785% 0.49048% 0.03415% 0.04448% 0.74266% 0.10151% 3.32710% 0.10145% 0.03806% 0.18839% 0.11768% 0.09927% 0.04894% 0.06122% 0.23362% 0.02496% 0.03585%
M 0.01494% 0.00059% 0.00830% 0.01797% 0.02465% 0.02646% 0.01902% 0.43398% 0.02639% 0.10145% 0.34692% 0.03492% 0.00545% 0.01401% 0.06966% 0.02065% 0.21767% 0.09216% 0.00243% 0.00888%
N 0.14965% 0.00436% 1.03201% 0.56563% 0.04645% 0.59986% 0.22111% 0.18541% 0.98850% 0.03806% 0.03492% 7.68851% 0.10433% 0.27206% 0.23419% 0.87369% 0.97118% 0.18356% 0.07702% 0.16000%
P 0.07279% 0.00565% 0.01654% 0.03244% 0.04883% 0.06160% 0.14915% 0.13266% 0.04278% 0.18839% 0.00545% 0.10433% 2.66926% 0.16309% 0.07608% 0.37732% 0.15606% 0.02161% 0.01534% 0.02157%
Q 0.08810% 0.00270% 0.14406% 0.42879% 0.00573% 0.11840% 0.47165% 0.05868% 1.04182% 0.11768% 0.01401% 0.27206% 0.16309% 2.39025% 0.61430% 0.12307% 0.11252% 0.05043% 0.02203% 0.06841%
R 0.17130% 0.01064% 0.06537% 0.30622% 0.02435% 0.52403% 0.19547% 0.18654% 1.11382% 0.09927% 0.06966% 0.23419% 0.07608% 0.61430% 4.47675% 0.32202% 0.28069% 0.16862% 0.01485% 0.05213%
S 0.28994% 0.00947% 0.10480% 0.18199% 0.03601% 0.52285% 0.13560% 0.15585% 0.18108% 0.04894% 0.02065% 0.87369% 0.37732% 0.12307% 0.32202% 3.21398% 0.87280% 0.13144% 0.06851% 0.03587%
T 1.19814% 0.00384% 0.12813% 0.36908% 0.03702% 0.24511% 0.09278% 0.89173% 0.66067% 0.06122% 0.21767% 0.97118% 0.15606% 0.11252% 0.28069% 0.87280% 5.45272% 0.50492% 0.02711% 0.04465%
V 0.60854% 0.00190% 0.03197% 0.18220% 0.08385% 0.08122% 0.01465% 1.72593% 0.18304% 0.23362% 0.09216% 0.18356% 0.02161% 0.05043% 0.16862% 0.13144% 0.50492% 2.73115% 0.00782% 0.06724%
W 0.00449% 0.00764% 0.00766% 0.01395% 0.13683% 0.02865% 0.05328% 0.01133% 0.00979% 0.02496% 0.00243% 0.07702% 0.01534% 0.02203% 0.01485% 0.06851% 0.02711% 0.00782% 1.14245% 0.04024%
Y 0.01030% 0.01616% 0.01451% 0.04173% 0.22330% 0.01795% 0.40024% 0.03821% 0.03786% 0.03585% 0.00888% 0.16000% 0.02157% 0.06841% 0.05213% 0.03587% 0.04465% 0.06724% 0.04024% 1.24517%

Expected Probability of Transition

  A C D E F G H I K L M N P Q R S T V W Y
A 0.22308% 0.28129% 0.27187% 0.46570% 0.35271% 0.68950% 0.19615% 1.08059% 0.58586% 0.42948% 0.08660% 1.04472% 0.33205% 0.41082% 0.63683% 0.51576% 0.83981% 0.46462% 0.13503% 0.18068%
C 0.28129% 0.08867% 0.17141% 0.29362% 0.22238% 0.43472% 0.12367% 0.68129% 0.36937% 0.27078% 0.05460% 0.65867% 0.20935% 0.25901% 0.40151% 0.32518% 0.52949% 0.29293% 0.08513% 0.11391%
D 0.27187% 0.17141% 0.08283% 0.28378% 0.21492% 0.42015% 0.11953% 0.65846% 0.35699% 0.26170% 0.05277% 0.63660% 0.20233% 0.25034% 0.38805% 0.31428% 0.51174% 0.28312% 0.08228% 0.11010%
E 0.46570% 0.29362% 0.28378% 0.24305% 0.36816% 0.71971% 0.20475% 1.12792% 0.61152% 0.44829% 0.09039% 1.09048% 0.34659% 0.42882% 0.66472% 0.53835% 0.87660% 0.48497% 0.14094% 0.18860%
F 0.35271% 0.22238% 0.21492% 0.36816% 0.13942% 0.54509% 0.15507% 0.85426% 0.46315% 0.33952% 0.06846% 0.82590% 0.26250% 0.32477% 0.50344% 0.40774% 0.66391% 0.36730% 0.10675% 0.14284%
G 0.68950% 0.43472% 0.42015% 0.71971% 0.54509% 0.53278% 0.30314% 1.66996% 0.90539% 0.66372% 0.13383% 1.61452% 0.51315% 0.63489% 0.98416% 0.79707% 1.29786% 0.71803% 0.20868% 0.27923%
H 0.19615% 0.12367% 0.11953% 0.20475% 0.15507% 0.30314% 0.04312% 0.47509% 0.25757% 0.18882% 0.03807% 0.45931% 0.14598% 0.18062% 0.27998% 0.22676% 0.36923% 0.20427% 0.05936% 0.07944%
I 1.08059% 0.68129% 0.65846% 1.12792% 0.85426% 1.66996% 0.47509% 1.30857% 1.41893% 1.04019% 0.20974% 2.53027% 0.80421% 0.99500% 1.54238% 1.24916% 2.03400% 1.12529% 0.32704% 0.43761%
K 0.58586% 0.36937% 0.35699% 0.61152% 0.46315% 0.90539% 0.25757% 1.41893% 0.38464% 0.56395% 0.11371% 1.37182% 0.43601% 0.53945% 0.83622% 0.67725% 1.10276% 0.61009% 0.17731% 0.23725%
L 0.42948% 0.27078% 0.26170% 0.44829% 0.33952% 0.66372% 0.18882% 1.04019% 0.56395% 0.20671% 0.08336% 1.00565% 0.31963% 0.39546% 0.61302% 0.49648% 0.80841% 0.44725% 0.12998% 0.17393%
M 0.08660% 0.05460% 0.05277% 0.09039% 0.06846% 0.13383% 0.03807% 0.20974% 0.11371% 0.08336% 0.00840% 0.20278% 0.06445% 0.07974% 0.12360% 0.10011% 0.16300% 0.09018% 0.02621% 0.03507%
N 1.04472% 0.65867% 0.63660% 1.09048% 0.82590% 1.61452% 0.45931% 2.53027% 1.37182% 1.00565% 0.20278% 1.22313% 0.77751% 0.96197% 1.49117% 1.20769% 1.96648% 1.08794% 0.31618% 0.42308%
P 0.33205% 0.20935% 0.20233% 0.34659% 0.26250% 0.51315% 0.14598% 0.80421% 0.43601% 0.31963% 0.06445% 0.77751% 0.12356% 0.30575% 0.47395% 0.38385% 0.62502% 0.34578% 0.10049% 0.13447%
Q 0.41082% 0.25901% 0.25034% 0.42882% 0.32477% 0.63489% 0.18062% 0.99500% 0.53945% 0.39546% 0.07974% 0.96197% 0.30575% 0.18914% 0.58639% 0.47491% 0.77330% 0.42782% 0.12433% 0.16637%
R 0.63683% 0.40151% 0.38805% 0.66472% 0.50344% 0.98416% 0.27998% 1.54238% 0.83622% 0.61302% 0.12360% 1.49117% 0.47395% 0.58639% 0.45448% 0.73617% 1.19870% 0.66317% 0.19273% 0.25790%
S 0.51576% 0.32518% 0.31428% 0.53835% 0.40774% 0.79707% 0.22676% 1.24916% 0.67725% 0.49648% 0.10011% 1.20769% 0.38385% 0.47491% 0.73617% 0.29811% 0.97083% 0.53710% 0.15609% 0.20887%
T 0.83981% 0.52949% 0.51174% 0.87660% 0.66391% 1.29786% 0.36923% 2.03400% 1.10276% 0.80841% 0.16300% 1.96648% 0.62502% 0.77330% 1.19870% 0.97083% 0.79039% 0.87456% 0.25417% 0.34010%
V 0.46462% 0.29293% 0.28312% 0.48497% 0.36730% 0.71803% 0.20427% 1.12529% 0.61009% 0.44725% 0.09018% 1.08794% 0.34578% 0.42782% 0.66317% 0.53710% 0.87456% 0.24192% 0.14061% 0.18816%
W 0.13503% 0.08513% 0.08228% 0.14094% 0.10675% 0.20868% 0.05936% 0.32704% 0.17731% 0.12998% 0.02621% 0.31618% 0.10049% 0.12433% 0.19273% 0.15609% 0.25417% 0.14061% 0.02043% 0.05468%
Y 0.18068% 0.11391% 0.11010% 0.18860% 0.14284% 0.27923% 0.07944% 0.43761% 0.23725% 0.17393% 0.03507% 0.42308% 0.13447% 0.16637% 0.25790% 0.20887% 0.34010% 0.18816% 0.05468% 0.03658%

Transition Count

  A C D E F G H I K L M N P Q R S T V W Y
A 2000649938 951143 62734200 189087077 3397375 118394588 15344486 64236177 153752445 24932263 10127492 101418031 49332503 59710469 116090718 196493874 811971256 412407364 3045631 6985204
C 951143 1990450253 413984 1394518 2138885 3489297 1077973 1239249 875542 985421 404798 2958748 3830028 1834117 7217002 6418102 2607506 1289671 5182282 10953098
D 62734200 413984 1057202724 350031710 2488891 105518221 14131986 26001005 165671811 6787060 5626158 699392712 11213977 97634663 44305166 71027618 86832694 21670144 5197396 9836012
E 189087077 1394518 350031710 1791231604 8409678 264679061 35916633 72793751 708171347 18880174 12179208 383327774 21986356 290592570 207524352 123337273 250124282 123477885 9456226 28280711
F 3397375 2138885 2488891 8409678 2001954935 10220004 16083061 214486044 15270105 332397565 16708148 31482130 33097755 3886780 16504633 24407912 25090045 56829720 92731052 151332250
G 118394588 3489297 105518221 264679061 10220004 > 2 Billion 16887313 78741589 209446254 23145246 17932405 406523860 41746518 80239268 355136885 354333402 166109459 55043591 19421688 12165356
H 15344486 1077973 14131986 35916633 16083061 16887313 714003805 22825539 46137240 30148914 12893597 149845468 101082913 319634411 132471299 91895526 62882674 9929466 36108919 271243959
I 64236177 1239249 26001005 72793751 214486044 78741589 22825539 > 2 Billion 109459351 503299218 294109140 125655921 89904895 39771043 126422768 105621909 604325137 1169651279n 7684296 25899346
K 153752445 875542 165671811 708171347 15270105 209446254 46137240 109459351 2012026726n 68798061 17887013 669902782 28997301 706040956 754832449 122720952 447734108 124045688 6636587 25659991
L 24932263 985421 6787060 18880174 332397565 23145246 30148914 503299218 68798061 > 2 Billion 68756105 25792948 127675485 79751935 67277105 33169600 41491083 158328539 16919601 24299977
M 10127492 404798 5626158 12179208 16708148 17932405 12893597 294109140 17887013 68756105 235111531 23665313 3699241 9497195 47213893 13999644 147515529 62462613 1652438 6021542
N 101418031 2958748 699392712 383327774 31482130 406523860 149845468 125655921 669902782 25792948 23665313 > 2 Billion 70706835 184374224 158714998 592099182 658162745 124400538 52200010 108432730
P 49332503 3830028 11213977 21986356 33097755 41746518 101082913 89904895 28997301 127675485 3699241 70706835 1808940942n 110526807 51564744 255707541 105765010 14649890 10396672 14617672
Q 59710469 1834117 97634663 290592570 3886780 80239268 319634411 39771043 706040956 79751935 9497195 184374224 110526807 1619861668n 416306831 83405353 76259423 34176496 14933677 46362649
R 116090718 7217002 44305166 207524352 16504633 355136885 132471299 126422768 754832449 67277105 47213893 158714998 51564744 416306831 > 2 Billion 218235306 190221742 114275738 10065840 35328911
S 196493874 6418102 71027618 123337273 24407912 354333402 91895526 105621909 122720952 33169600 13999644 592099182 255707541 83405353 218235306 > 2 Billion 591496383 89078560 46432475 24312552
T 811971256 2607506 86832694 250124282 25090045 166109459 62882674 604325137 447734108 41491083 147515529 658162745 105765010 76259423 190221742 591496383 > 2 Billion 342183939 18377734 30262091
V 412407364 1289671 21670144 123477885 56829720 55043591 9929466 1169651279n 124045688 158328539 62462613 124400538 14649890 34176496 114275738 89078560 342183939 1850883216n 5305541 45567915
W 3045631 5182282 5197396 9456226 92731052 19421688 36108919 7684296 6636587 16919601 1652438 52200010 10396672 14933677 10065840 46432475 18377734 5305541 774231513 27274621
Y 6985204 10953098 9836012 28280711 151332250 12165356 271243959 25899346 25659991 24299977 6021542 108432730 14617672 46362649 35328911 24312552 30262091 45567915 27274621 843848995

Number of Amino Acids in Alignment

  A C D E F G H I K L M N P Q R S T V W Y
A 265496 - - - - - - - - - - - - - - - - - - -
C - 200406 - - - - - - - - - - - - - - - - - -
D - - 197046 - - - - - - - - - - - - - - - - -
E - - - 327605 - - - - - - - - - - - - - - - -
F - - - - 226253 - - - - - - - - - - - - - - -
G - - - - - 445250 - - - - - - - - - - - - - -
H - - - - - - 110087 - - - - - - - - - - - - -
I - - - - - - - 596341 - - - - - - - - - - - -
K - - - - - - - - 369622 - - - - - - - - - - -
L - - - - - - - - - 316590 - - - - - - - - - -
M - - - - - - - - - - 78950 - - - - - - - - -
N - - - - - - - - - - - 656383 - - - - - - - -
P - - - - - - - - - - - - 233014 - - - - - - -
Q - - - - - - - - - - - - - 243448 - - - - - -
R - - - - - - - - - - - - - - 357164 - - - - -
S - - - - - - - - - - - - - - - 374508 - - - -
T - - - - - - - - - - - - - - - - 568188 - - -
V - - - - - - - - - - - - - - - - - 316029 - -
W - - - - - - - - - - - - - - - - - - 96630 -
Y - - - - - - - - - - - - - - - - - - - 129500

Percentage of Amino Acids in Alignment

  A C D E F G H I K L M N P Q R S T V W Y
A 4.34% - - - - - - - - - - - - - - - - - - -
C - 3.28% - - - - - - - - - - - - - - - - - -
D - - 3.22% - - - - - - - - - - - - - - - - -
E - - - 5.36% - - - - - - - - - - - - - - - -
F - - - - 3.70% - - - - - - - - - - - - - - -
G - - - - - 7.28% - - - - - - - - - - - - - -
H - - - - - - 1.80% - - - - - - - - - - - - -
I - - - - - - - 9.76% - - - - - - - - - - - -
K - - - - - - - - 6.05% - - - - - - - - - - -
L - - - - - - - - - 5.18% - - - - - - - - - -
M - - - - - - - - - - 1.29% - - - - - - - - -
N - - - - - - - - - - - 10.7% - - - - - - - -
P - - - - - - - - - - - - 3.81% - - - - - - -
Q - - - - - - - - - - - - - 3.98% - - - - - -
R - - - - - - - - - - - - - - 5.84% - - - - -
S - - - - - - - - - - - - - - - 6.13% - - - -
T - - - - - - - - - - - - - - - - 9.30% - - -
V - - - - - - - - - - - - - - - - - 5.17% - -
W - - - - - - - - - - - - - - - - - - 1.58% -
Y - - - - - - - - - - - - - - - - - - - 2.11%