Leucine Rich Repeat

Blosum Log2 No Clustering

  A C D E F G H I K L M N P Q R S T V W Y
A 2 1 0 1 -1 1 0 -3 1 -2 0 0 1 1 1 1 1 0 1 0
C 1 6 -1 0 0 0 0 -2 -1 0 2 -1 -2 0 -1 0 0 -1 1 0
D 0 -1 4 1 -2 1 1 -3 0 -6 -2 1 0 0 1 1 0 -1 1 2
E 1 0 1 2 -2 0 1 -3 1 -6 -1 -1 1 2 1 1 2 0 1 1
F -1 0 -2 -2 3 -2 -1 2 -2 1 1 -3 -4 -2 -2 -2 -2 1 1 0
G 1 0 1 0 -2 4 1 -5 1 -6 -2 0 0 0 1 1 -1 -2 1 0
H 0 0 1 1 -1 1 2 -4 1 -6 -1 1 0 1 1 1 1 -1 1 2
I -3 -2 -3 -3 2 -5 -4 4 -4 2 1 -5 -5 -4 -3 -4 -3 2 -1 -2
K 1 -1 0 1 -2 1 1 -4 2 -6 -1 0 0 2 2 1 1 0 0 0
L -2 0 -6 -6 1 -6 -6 2 -6 3 2 -6 -6 -5 -6 -6 -5 1 -2 -5
M 0 2 -2 -1 1 -2 -1 1 -1 2 2 -1 -2 -1 -1 -1 -1 0 0 -1
N 0 -1 1 -1 -3 0 1 -5 0 -6 -1 4 -3 0 0 0 0 -3 -1 1
P 1 -2 0 1 -4 0 0 -5 0 -6 -2 -3 6 0 0 0 0 -2 -1 -2
Q 1 0 0 2 -2 0 1 -4 2 -5 -1 0 0 2 2 1 1 0 0 0
R 1 -1 1 1 -2 1 1 -3 2 -6 -1 0 0 2 2 1 1 0 0 1
S 1 0 1 1 -2 1 1 -4 1 -6 -1 0 0 1 1 2 1 -1 1 1
T 1 0 0 2 -2 -1 1 -3 1 -5 -1 0 0 1 1 1 3 1 0 0
V 0 -1 -1 0 1 -2 -1 2 0 1 0 -3 -2 0 0 -1 1 2 0 0
W 1 1 1 1 1 1 1 -1 0 -2 0 -1 -1 0 0 1 0 0 2 2
Y 0 0 2 1 0 0 2 -2 0 -5 -1 1 -2 0 1 1 0 0 2 3

Blosum LN No Clustering

  A C D E F G H I K L M N P Q R S T V W Y
A 1 1 0 1 -1 1 0 -2 1 -2 0 0 0 1 0 1 0 0 1 0
C 1 4 0 0 0 0 0 -1 0 0 1 -1 -1 0 -1 0 0 0 1 0
D 0 0 3 1 -1 1 1 -2 0 -4 -1 1 0 0 0 1 0 -1 1 2
E 1 0 1 1 -1 0 1 -2 1 -4 -1 -1 0 1 1 1 1 0 1 1
F -1 0 -1 -1 2 -1 -1 2 -2 1 1 -2 -3 -2 -1 -1 -1 0 0 0
G 1 0 1 0 -1 3 1 -3 1 -4 -1 0 0 0 1 0 -1 -2 1 0
H 0 0 1 1 -1 1 1 -3 1 -4 -1 1 0 1 1 1 0 0 1 1
I -2 -1 -2 -2 2 -3 -3 3 -3 1 0 -4 -4 -3 -2 -3 -2 1 -1 -2
K 1 0 0 1 -2 1 1 -3 2 -4 -1 0 0 1 1 0 1 0 0 0
L -2 0 -4 -4 1 -4 -4 1 -4 2 1 -4 -4 -4 -4 -4 -3 1 -1 -3
M 0 1 -1 -1 1 -1 -1 0 -1 1 1 -1 -2 -1 -1 -1 -1 0 0 -1
N 0 -1 1 -1 -2 0 1 -4 0 -4 -1 3 -2 0 0 0 0 -2 0 0
P 0 -1 0 0 -3 0 0 -4 0 -4 -2 -2 4 0 0 0 0 -1 -1 -2
Q 1 0 0 1 -2 0 1 -3 1 -4 -1 0 0 2 1 1 1 0 0 0
R 0 -1 0 1 -1 1 1 -2 1 -4 -1 0 0 1 1 1 1 0 0 1
S 1 0 1 1 -1 0 1 -3 0 -4 -1 0 0 1 1 1 1 -1 0 1
T 0 0 0 1 -1 -1 0 -2 1 -3 -1 0 0 1 1 1 2 0 0 0
V 0 0 -1 0 0 -2 0 1 0 1 0 -2 -1 0 0 -1 0 1 0 0
W 1 1 1 1 0 1 1 -1 0 -1 0 0 -1 0 0 0 0 0 1 1
Y 0 0 2 1 0 0 1 -2 0 -3 -1 0 -2 0 1 1 0 0 1 2

Blosum Log10 No Clustering

  A C D E F G H I K L M N P Q R S T V W Y
A 1 0 0 0 0 0 0 -1 0 -1 0 0 0 0 0 0 0 0 0 0
C 0 2 0 0 0 0 0 0 0 0 1 0 -1 0 0 0 0 0 0 0
D 0 0 1 0 0 0 0 -1 0 -2 0 0 0 0 0 0 0 0 0 1
E 0 0 0 1 -1 0 0 -1 0 -2 0 0 0 0 0 0 1 0 0 0
F 0 0 0 -1 1 0 0 1 -1 0 0 -1 -1 -1 -1 -1 -1 0 0 0
G 0 0 0 0 0 1 0 -1 0 -2 -1 0 0 0 0 0 0 -1 0 0
H 0 0 0 0 0 0 1 -1 0 -2 0 0 0 0 0 0 0 0 0 1
I -1 0 -1 -1 1 -1 -1 1 -1 1 0 -2 -2 -1 -1 -1 -1 1 0 -1
K 0 0 0 0 -1 0 0 -1 1 -2 0 0 0 1 1 0 0 0 0 0
L -1 0 -2 -2 0 -2 -2 1 -2 1 1 -2 -2 -2 -2 -2 -1 0 -1 -1
M 0 1 0 0 0 -1 0 0 0 1 1 0 -1 0 0 0 0 0 0 0
N 0 0 0 0 -1 0 0 -2 0 -2 0 1 -1 0 0 0 0 -1 0 0
P 0 -1 0 0 -1 0 0 -2 0 -2 -1 -1 2 0 0 0 0 -1 0 -1
Q 0 0 0 0 -1 0 0 -1 1 -2 0 0 0 1 1 0 0 0 0 0
R 0 0 0 0 -1 0 0 -1 1 -2 0 0 0 1 1 0 0 0 0 0
S 0 0 0 0 -1 0 0 -1 0 -2 0 0 0 0 0 1 0 0 0 0
T 0 0 0 1 -1 0 0 -1 0 -1 0 0 0 0 0 0 1 0 0 0
V 0 0 0 0 0 -1 0 1 0 0 0 -1 -1 0 0 0 0 0 0 0
W 0 0 0 0 0 0 0 0 0 -1 0 0 0 0 0 0 0 0 1 0
Y 0 0 1 0 0 0 1 -1 0 -1 0 0 -1 0 0 0 0 0 0 1

Distance Log2

  A C D E F G H I K L M N P Q R S T V W Y
A 8 9 7 7 8 7 8 8 7 6 9 7 7 7 7 6 7 8 10 9
C 9 9 9 9 9 9 10 9 9 7 10 9 10 10 10 8 9 10 11 10
D 7 9 6 6 8 6 7 8 7 8 10 6 7 7 7 5 7 8 9 7
E 7 9 6 7 8 7 7 8 6 8 9 6 6 6 6 5 6 7 9 8
F 8 9 8 8 7 8 9 5 8 4 9 7 9 9 8 7 8 7 10 9
G 7 9 6 7 8 5 7 9 6 8 10 6 7 7 6 5 7 8 9 8
H 8 10 7 7 9 7 9 9 7 9 10 6 8 8 7 6 8 8 10 8
I 8 9 8 8 5 9 9 5 8 3 8 8 9 9 8 7 8 6 10 9
K 7 9 7 6 8 6 7 8 7 8 9 6 7 6 6 5 6 7 10 8
L 6 7 8 8 4 8 9 3 8 2 6 7 8 8 8 6 7 5 9 8
M 9 10 10 9 9 10 10 8 9 6 11 9 10 10 10 8 9 9 12 10
N 7 9 6 6 7 6 6 8 6 7 9 4 7 6 6 5 6 8 9 7
P 7 10 7 6 9 7 8 9 7 8 10 7 5 7 7 6 7 8 11 9
Q 7 10 7 6 9 7 8 9 6 8 10 6 7 8 7 6 7 8 10 8
R 7 10 7 6 8 6 7 8 6 8 10 6 7 7 7 6 7 8 10 8
S 6 8 5 5 7 5 6 7 5 6 8 5 6 6 6 5 5 6 9 7
T 7 9 7 6 8 7 8 8 6 7 9 6 7 7 7 5 6 7 10 8
V 8 10 8 7 7 8 8 6 7 5 9 8 8 8 8 6 7 8 10 8
W 10 11 9 9 10 9 10 10 10 9 12 9 11 10 10 9 10 10 13 10
Y 9 10 7 8 9 8 8 9 8 8 10 7 9 8 8 7 8 8 10 9

Distance LN

  A C D E F G H I K L M N P Q R S T V W Y
A 5 6 5 4 5 4 5 5 5 4 6 4 5 5 5 4 5 5 7 6
C 6 6 6 6 6 6 7 6 6 4 7 6 6 6 6 5 6 6 8 7
D 5 6 4 4 5 4 5 5 5 5 6 4 4 5 4 3 5 5 6 5
E 4 6 4 4 5 4 5 5 4 5 6 4 4 4 4 3 4 4 6 5
F 5 6 5 5 4 5 6 3 5 3 6 5 6 6 5 5 5 5 7 6
G 4 6 4 4 5 3 5 6 4 5 6 4 5 5 4 3 5 5 6 5
H 5 7 5 5 6 5 6 6 5 6 7 4 5 5 5 4 5 6 7 5
I 5 6 5 5 3 6 6 3 6 2 5 5 6 6 6 5 5 4 7 6
K 5 6 5 4 5 4 5 6 4 5 6 4 4 4 4 3 4 5 7 5
L 4 4 5 5 3 5 6 2 5 1 4 4 5 5 5 4 5 3 6 5
M 6 7 6 6 6 6 7 5 6 4 7 6 7 6 6 5 6 6 8 7
N 4 6 4 4 5 4 4 5 4 4 6 2 5 4 4 3 4 5 6 4
P 5 6 4 4 6 5 5 6 4 5 7 5 3 5 5 4 4 5 7 6
Q 5 6 5 4 6 5 5 6 4 5 6 4 5 5 4 4 4 5 7 6
R 5 6 4 4 5 4 5 6 4 5 6 4 5 4 5 4 4 5 7 5
S 4 5 3 3 5 3 4 5 3 4 5 3 4 4 4 3 3 4 6 4
T 5 6 5 4 5 5 5 5 4 5 6 4 4 4 4 3 4 4 7 5
V 5 6 5 4 5 5 6 4 5 3 6 5 5 5 5 4 4 5 7 6
W 7 8 6 6 7 6 7 7 7 6 8 6 7 7 7 6 7 7 9 7
Y 6 7 5 5 6 5 5 6 5 5 7 4 6 6 5 4 5 6 7 6

Distance Log10

  A C D E F G H I K L M N P Q R S T V W Y
A 2 2 2 1 2 1 2 2 1 1 2 1 1 2 2 1 1 2 2 2
C 2 2 2 2 2 2 2 2 2 1 2 2 2 2 2 2 2 2 3 2
D 2 2 1 1 2 1 1 2 1 2 2 1 1 2 1 1 1 2 2 1
E 1 2 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 2 2
F 2 2 2 2 1 2 2 1 2 1 2 2 2 2 2 1 2 1 2 2
G 1 2 1 1 2 1 2 2 1 2 2 1 1 1 1 1 1 2 2 2
H 2 2 1 1 2 2 2 2 2 2 2 1 2 2 2 1 2 2 2 2
I 2 2 2 2 1 2 2 1 2 0 2 2 2 2 2 2 2 1 2 2
K 1 2 1 1 2 1 2 2 1 2 2 1 1 1 1 1 1 2 2 2
L 1 1 2 2 1 2 2 0 2 0 1 1 2 2 2 1 1 1 2 2
M 2 2 2 2 2 2 2 2 2 1 3 2 2 2 2 2 2 2 3 2
N 1 2 1 1 2 1 1 2 1 1 2 0 1 1 1 1 1 2 2 1
P 1 2 1 1 2 1 2 2 1 2 2 1 1 1 1 1 1 2 3 2
Q 2 2 2 1 2 1 2 2 1 2 2 1 1 2 1 1 1 2 2 2
R 2 2 1 1 2 1 2 2 1 2 2 1 1 1 1 1 1 2 2 2
S 1 2 1 1 1 1 1 2 1 1 2 1 1 1 1 1 1 1 2 1
T 1 2 1 1 2 1 2 2 1 1 2 1 1 1 1 1 1 1 2 2
V 2 2 2 1 1 2 2 1 2 1 2 2 2 2 2 1 1 2 2 2
W 2 3 2 2 2 2 2 2 2 2 3 2 3 2 2 2 2 2 3 2
Y 2 2 1 2 2 2 2 2 2 2 2 1 2 2 2 1 2 2 2 2

Observed Probability of Transition

  A C D E F G H I K L M N P Q R S T V W Y
A 0.18588% 0.08964% 0.31169% 0.44497% 0.15460% 0.42001% 0.17312% 0.16528% 0.35554% 0.56811% 0.07300% 0.49641% 0.36597% 0.28678% 0.30840% 0.96853% 0.37892% 0.21572% 0.04574% 0.12173%
C 0.08964% 0.10240% 0.07736% 0.10222% 0.09530% 0.11246% 0.04655% 0.07743% 0.07700% 0.50637% 0.05058% 0.12622% 0.05640% 0.06731% 0.06758% 0.21826% 0.09461% 0.06420% 0.01774% 0.03736%
D 0.31169% 0.07736% 0.67160% 0.57421% 0.18985% 0.59092% 0.34019% 0.17373% 0.40478% 0.23095% 0.06347% 1.03316% 0.43473% 0.31620% 0.44888% 1.17186% 0.36183% 0.22720% 0.07377% 0.36189%
E 0.44497% 0.10222% 0.57421% 0.53701% 0.20352% 0.51575% 0.33044% 0.22252% 0.67570% 0.27321% 0.08290% 0.70578% 0.57681% 0.59702% 0.64365% 1.48035% 0.88289% 0.43047% 0.07465% 0.26835%
F 0.15460% 0.09530% 0.18985% 0.20352% 0.47805% 0.21536% 0.11310% 1.13678% 0.15232% 2.57389% 0.12676% 0.28201% 0.10239% 0.11706% 0.15078% 0.39107% 0.18076% 0.35935% 0.05023% 0.12228%
G 0.42001% 0.11246% 0.59092% 0.51575% 0.21536% 1.12006% 0.31445% 0.11077% 0.70274% 0.23454% 0.05862% 0.84834% 0.38873% 0.37785% 0.62062% 1.22720% 0.33327% 0.16048% 0.07393% 0.21410%
H 0.17312% 0.04655% 0.34019% 0.33044% 0.11310% 0.31445% 0.10795% 0.07980% 0.29817% 0.12785% 0.03922% 0.55722% 0.21296% 0.22742% 0.28630% 0.67058% 0.26792% 0.14005% 0.03509% 0.17508%
I 0.16528% 0.07743% 0.17373% 0.22252% 1.13678% 0.11077% 0.07980% 1.39372% 0.14922% 5.31578% 0.19430% 0.17362% 0.09801% 0.11802% 0.14948% 0.31103% 0.23971% 0.83597% 0.04610% 0.10833%
K 0.35554% 0.07700% 0.40478% 0.67570% 0.15232% 0.70274% 0.29817% 0.14922% 0.41521% 0.24555% 0.07105% 0.85328% 0.42916% 0.58000% 0.67616% 1.11534% 0.62352% 0.28495% 0.04599% 0.18849%
L 0.56811% 0.50637% 0.23095% 0.27321% 2.57389% 0.23454% 0.12785% 5.31578% 0.24555% 13.4434% 0.96951% 0.46017% 0.21317% 0.22188% 0.22554% 0.55846% 0.39773% 2.09329% 0.12741% 0.16127%
M 0.07300% 0.05058% 0.06347% 0.08290% 0.12676% 0.05862% 0.03922% 0.19430% 0.07105% 0.96951% 0.03138% 0.13693% 0.05059% 0.05972% 0.06346% 0.15501% 0.08101% 0.10851% 0.01479% 0.03506%
N 0.49641% 0.12622% 1.03316% 0.70578% 0.28201% 0.84834% 0.55722% 0.17362% 0.85328% 0.46017% 0.13693% 3.65262% 0.32807% 0.65989% 0.74574% 1.95025% 0.81946% 0.25885% 0.08112% 0.41303%
P 0.36597% 0.05640% 0.43473% 0.57681% 0.10239% 0.38873% 0.21296% 0.09801% 0.42916% 0.21317% 0.05059% 0.32807% 1.85538% 0.32974% 0.33503% 0.97678% 0.47825% 0.18407% 0.03034% 0.07961%
Q 0.28678% 0.06731% 0.31620% 0.59702% 0.11706% 0.37785% 0.22742% 0.11802% 0.58000% 0.22188% 0.05972% 0.65989% 0.32974% 0.25548% 0.53316% 0.98469% 0.54735% 0.21956% 0.03766% 0.14129%
R 0.30840% 0.06758% 0.44888% 0.64365% 0.15078% 0.62062% 0.28630% 0.14948% 0.67616% 0.22554% 0.06346% 0.74574% 0.33503% 0.53316% 0.32244% 1.08967% 0.52374% 0.25654% 0.04891% 0.20957%
S 0.96853% 0.21826% 1.17186% 1.48035% 0.39107% 1.22720% 0.67058% 0.31103% 1.11534% 0.55846% 0.15501% 1.95025% 0.97678% 0.98469% 1.08967% 2.05507% 1.45547% 0.56170% 0.13440% 0.50002%
T 0.37892% 0.09461% 0.36183% 0.88289% 0.18076% 0.33327% 0.26792% 0.23971% 0.62352% 0.39773% 0.08101% 0.81946% 0.47825% 0.54735% 0.52374% 1.45547% 0.56753% 0.43124% 0.05280% 0.20286%
V 0.21572% 0.06420% 0.22720% 0.43047% 0.35935% 0.16048% 0.14005% 0.83597% 0.28495% 2.09329% 0.10851% 0.25885% 0.18407% 0.21956% 0.25654% 0.56170% 0.43124% 0.23703% 0.04070% 0.14896%
W 0.04574% 0.01774% 0.07377% 0.07465% 0.05023% 0.07393% 0.03509% 0.04610% 0.04599% 0.12741% 0.01479% 0.08112% 0.03034% 0.03766% 0.04891% 0.13440% 0.05280% 0.04070% 0.00577% 0.03497%
Y 0.12173% 0.03736% 0.36189% 0.26835% 0.12228% 0.21410% 0.17508% 0.10833% 0.18849% 0.16127% 0.03506% 0.41303% 0.07961% 0.14129% 0.20957% 0.50002% 0.20286% 0.14896% 0.03497% 0.09085%

Expected Probability of Transition

  A C D E F G H I K L M N P Q R S T V W Y
A 0.09973% 0.06914% 0.27569% 0.32083% 0.24233% 0.30823% 0.14689% 0.39454% 0.27662% 1.33873% 0.07886% 0.57586% 0.29627% 0.21896% 0.25353% 0.63257% 0.29964% 0.23672% 0.03404% 0.11703%
C 0.06914% 0.01198% 0.09556% 0.11121% 0.08400% 0.10684% 0.05092% 0.13676% 0.09589% 0.46407% 0.02733% 0.19962% 0.10270% 0.07590% 0.08788% 0.21928% 0.10387% 0.08206% 0.01180% 0.04057%
D 0.27569% 0.09556% 0.19053% 0.44346% 0.33495% 0.42603% 0.20303% 0.54533% 0.38234% 1.85038% 0.10900% 0.79594% 0.40950% 0.30265% 0.35042% 0.87434% 0.41417% 0.32719% 0.04705% 0.16176%
E 0.32083% 0.11121% 0.44346% 0.25803% 0.38979% 0.49580% 0.23628% 0.63463% 0.44496% 2.15338% 0.12685% 0.92628% 0.47656% 0.35221% 0.40781% 1.01752% 0.48199% 0.38077% 0.05475% 0.18825%
F 0.24233% 0.08400% 0.33495% 0.38979% 0.14721% 0.37448% 0.17846% 0.47934% 0.33608% 1.62647% 0.09581% 0.69963% 0.35995% 0.26602% 0.30802% 0.76854% 0.36405% 0.28760% 0.04136% 0.14219%
G 0.30823% 0.10684% 0.42603% 0.49580% 0.37448% 0.23816% 0.22700% 0.60970% 0.42747% 2.06878% 0.12187% 0.88989% 0.45784% 0.33837% 0.39179% 0.97754% 0.46305% 0.36581% 0.05260% 0.18086%
H 0.14689% 0.05092% 0.20303% 0.23628% 0.17846% 0.22700% 0.05409% 0.29056% 0.20372% 0.98592% 0.05808% 0.42409% 0.21819% 0.16125% 0.18671% 0.46586% 0.22067% 0.17433% 0.02507% 0.08619%
I 0.39454% 0.13676% 0.54533% 0.63463% 0.47934% 0.60970% 0.29056% 0.39021% 0.54717% 2.64807% 0.15600% 1.13908% 0.58604% 0.43312% 0.50149% 1.25127% 0.59272% 0.46825% 0.06733% 0.23150%
K 0.27662% 0.09589% 0.38234% 0.44496% 0.33608% 0.42747% 0.20372% 0.54717% 0.19182% 1.85663% 0.10937% 0.79864% 0.41089% 0.30367% 0.35161% 0.87730% 0.41557% 0.32830% 0.04721% 0.16231%
L 1.33873% 0.46407% 1.85038% 2.15338% 1.62647% 2.06878% 0.98592% 2.64807% 1.85663% 4.49260% 0.52933% 3.86502% 1.98851% 1.46963% 1.70163% 4.24570% 2.01116% 1.58883% 0.22848% 0.78552%
M 0.07886% 0.02733% 0.10900% 0.12685% 0.09581% 0.12187% 0.05808% 0.15600% 0.10937% 0.52933% 0.01559% 0.22769% 0.11714% 0.08657% 0.10024% 0.25012% 0.11848% 0.09360% 0.01346% 0.04627%
N 0.57586% 0.19962% 0.79594% 0.92628% 0.69963% 0.88989% 0.42409% 1.13908% 0.79864% 3.86502% 0.22769% 0.83127% 0.85536% 0.63217% 0.73196% 1.82630% 0.86511% 0.68344% 0.09828% 0.33789%
P 0.29627% 0.10270% 0.40950% 0.47656% 0.35995% 0.45784% 0.21819% 0.58604% 0.41089% 1.98851% 0.11714% 0.85536% 0.22003% 0.32524% 0.37659% 0.93961% 0.44509% 0.35162% 0.05056% 0.17384%
Q 0.21896% 0.07590% 0.30265% 0.35221% 0.26602% 0.33837% 0.16125% 0.43312% 0.30367% 1.46963% 0.08657% 0.63217% 0.32524% 0.12018% 0.27832% 0.69443% 0.32894% 0.25987% 0.03737% 0.12848%
R 0.25353% 0.08788% 0.35042% 0.40781% 0.30802% 0.39179% 0.18671% 0.50149% 0.35161% 1.70163% 0.10024% 0.73196% 0.37659% 0.27832% 0.16113% 0.80406% 0.38087% 0.30089% 0.04327% 0.14876%
S 0.63257% 0.21928% 0.87434% 1.01752% 0.76854% 0.97754% 0.46586% 1.25127% 0.87730% 4.24570% 0.25012% 1.82630% 0.93961% 0.69443% 0.80406% 1.00309% 0.95031% 0.75075% 0.10796% 0.37117%
T 0.29964% 0.10387% 0.41417% 0.48199% 0.36405% 0.46305% 0.22067% 0.59272% 0.41557% 2.01116% 0.11848% 0.86511% 0.44509% 0.32894% 0.38087% 0.95031% 0.22508% 0.35562% 0.05114% 0.17582%
V 0.23672% 0.08206% 0.32719% 0.38077% 0.28760% 0.36581% 0.17433% 0.46825% 0.32830% 1.58883% 0.09360% 0.68344% 0.35162% 0.25987% 0.30089% 0.75075% 0.35562% 0.14047% 0.04040% 0.13890%
W 0.03404% 0.01180% 0.04705% 0.05475% 0.04136% 0.05260% 0.02507% 0.06733% 0.04721% 0.22848% 0.01346% 0.09828% 0.05056% 0.03737% 0.04327% 0.10796% 0.05114% 0.04040% 0.00290% 0.01997%
Y 0.11703% 0.04057% 0.16176% 0.18825% 0.14219% 0.18086% 0.08619% 0.23150% 0.16231% 0.78552% 0.04627% 0.33789% 0.17384% 0.12848% 0.14876% 0.37117% 0.17582% 0.13890% 0.01997% 0.03433%

Transition Count

  A C D E F G H I K L M N P Q R S T V W Y
A 16143965 7785676 27069825 38644871 13426654 36477288 15035585 14354653 30878011 49339388 6340011 43112366 31784152 24906008 26783654 84114119 32908757 18735255 3972843 10571867
C 7785676 8893295 6718974 8877473 8276820 9767420 4042749 6724576 6687518 43976890 4392737 10961942 4898925 5845871 5869393 18955961 8216824 5575946 1540711 3244652
D 27069825 6718974 58326652 49868547 16488241 51320058 29544761 15088595 35154657 20057566 5512305 89727751 37755819 27461422 38984535 101773295 31424520 19731735 6406784 31429406
E 38644871 8877473 49868547 46638516 17675092 44791959 28698273 19325477 58683083 23727981 7199823 61295267 50094473 51849673 55899502 128564173 76677015 37385371 6483097 23306173
F 13426654 8276820 16488241 17675092 41517569 18703427 9822752 98726423 13229163 223535029 11009243 24492173 8892347 10166627 13094773 33963422 15699173 31208729 4362972 10620234
G 36477288 9767420 51320058 44791959 18703427 97274378 27309152 9620869 61031434 20369771 5091711 73676693 33760293 32815172 53899677 106579531 28944107 13938015 6420872 18594643
H 15035585 4042749 29544761 28698273 9822752 27309152 9375206 6930635 25895556 11103939 3406864 48392989 18495047 19751452 24864988 58238177 23268476 12163595 3048133 15205458
I 14354653 6724576 15088595 19325477 98726423 9620869 6930635 121040613 12960059 461660219 16875159 15078713 8512294 10249722 12982709 27012528 20818346 72602263 4003947 9408179
K 30878011 6687518 35154657 58683083 13229163 61031434 25895556 12960059 36059896 21325380 6170898 74104978 37271467 50371756 58723271 96864102 54150950 24747867 3994206 16370432
L 49339388 43976890 20057566 23727981 223535029 20369771 11103939 461660219 21325380 1167520921 84199304 39965108 18513344 19269616 19587975 48501358 34541727 181796415 11065372 14006050
M 6340011 4392737 5512305 7199823 11009243 5091711 3406864 16875159 6170898 84199304 2725266 11892551 4394033 5187019 5511829 13462282 7036301 9423953 1285005 3044851
N 43112366 10961942 89727751 61295267 24492173 73676693 48392989 15078713 74104978 39965108 11892551 317220084 28492198 57309614 64765686 169374091 71168288 22481112 7045037 35871157
P 31784152 4898925 37755819 50094473 8892347 33760293 18495047 8512294 37271467 18513344 4394033 28492198 161135100 28636992 29096754 84830836 41535093 15986694 2635742 6914617
Q 24906008 5845871 27461422 51849673 10166627 32815172 19751452 10249722 50371756 19269616 5187019 57309614 28636992 22188388 46303780 85517775 47536245 19068413 3271220 12270614
R 26783654 5869393 38984535 55899502 13094773 53899677 24864988 12982709 58723271 19587975 5511829 64765686 29096754 46303780 28003567 94635275 45485889 22279735 4247938 18201346
S 84114119 18955961 101773295 128564173 33963422 106579531 58238177 27012528 96864102 48501358 13462282 169374091 84830836 85517775 94635275 178477364 126403876 48782818 11672740 43426041
T 32908757 8216824 31424520 76677015 15699173 28944107 23268476 20818346 54150950 34541727 7036301 71168288 41535093 47536245 45485889 126403876 49289030 37452313 4586217 17618531
V 18735255 5575946 19731735 37385371 31208729 13938015 12163595 72602263 24747867 181796415 9423953 22481112 15986694 19068413 22279735 48782818 37452313 20585554 3535000 12937570
W 3972843 1540711 6406784 6483097 4362972 6420872 3048133 4003947 3994206 11065372 1285005 7045037 2635742 3271220 4247938 11672740 4586217 3535000 501818 3037620
Y 10571867 3244652 31429406 23306173 10620234 18594643 15205458 9408179 16370432 14006050 3044851 35871157 6914617 12270614 18201346 43426041 17618531 12937570 3037620 7890662

Number of Amino Acids in Alignment

  A C D E F G H I K L M N P Q R S T V W Y
A 23097 - - - - - - - - - - - - - - - - - - -
C - 10897 - - - - - - - - - - - - - - - - - -
D - - 29257 - - - - - - - - - - - - - - - - -
E - - - 34361 - - - - - - - - - - - - - - - -
F - - - - 25196 - - - - - - - - - - - - - - -
G - - - - - 38029 - - - - - - - - - - - - - -
H - - - - - - 15375 - - - - - - - - - - - - -
I - - - - - - - 40176 - - - - - - - - - - - -
K - - - - - - - - 30286 - - - - - - - - - - -
L - - - - - - - - - 134669 - - - - - - - - - -
M - - - - - - - - - - 8500 - - - - - - - - -
N - - - - - - - - - - - 61890 - - - - - - - -
P - - - - - - - - - - - - 31139 - - - - - - -
Q - - - - - - - - - - - - - 23488 - - - - - -
R - - - - - - - - - - - - - - 27545 - - - - -
S - - - - - - - - - - - - - - - 67695 - - - -
T - - - - - - - - - - - - - - - - 32592 - - -
V - - - - - - - - - - - - - - - - - 25045 - -
W - - - - - - - - - - - - - - - - - - 3857 -
Y - - - - - - - - - - - - - - - - - - - 12199

Percentage of Amino Acids in Alignment

  A C D E F G H I K L M N P Q R S T V W Y
A 3.42% - - - - - - - - - - - - - - - - - - -
C - 1.61% - - - - - - - - - - - - - - - - - -
D - - 4.33% - - - - - - - - - - - - - - - - -
E - - - 5.08% - - - - - - - - - - - - - - - -
F - - - - 3.73% - - - - - - - - - - - - - - -
G - - - - - 5.63% - - - - - - - - - - - - - -
H - - - - - - 2.27% - - - - - - - - - - - - -
I - - - - - - - 5.94% - - - - - - - - - - - -
K - - - - - - - - 4.48% - - - - - - - - - - -
L - - - - - - - - - 19.9% - - - - - - - - - -
M - - - - - - - - - - 1.25% - - - - - - - - -
N - - - - - - - - - - - 9.16% - - - - - - - -
P - - - - - - - - - - - - 4.61% - - - - - - -
Q - - - - - - - - - - - - - 3.47% - - - - - -
R - - - - - - - - - - - - - - 4.07% - - - - -
S - - - - - - - - - - - - - - - 10.0% - - - -
T - - - - - - - - - - - - - - - - 4.82% - - -
V - - - - - - - - - - - - - - - - - 3.70% - -
W - - - - - - - - - - - - - - - - - - 0.57% -
Y - - - - - - - - - - - - - - - - - - - 1.80%