Blosum Log2 No Clustering

	A	C	D	E	F	G	H	I	K	L	M	N	P	Q	R	S	T	V	W	Y
A	8	-8	-6	-3	-11	-8	0	-9	-8	-8	-2	-7	0	-8	-7	-1	-1	-9	-13	-12
C	-8	13	-19	-10	9	-8	-11	-12	-21	-5	-10	-10	-20	-10	-13	-4	-9	-11	-11	-7
D	-6	-19	9	2	-23	-10	0	-16	-7	-19	-9	-7	-10	-11	-11	-6	-8	-14	-33	-10
E	-3	-10	2	7	-9	-10	-2	-10	-4	-10	2	-5	-9	-4	-3	-7	-8	-3	-35	-20
F	-11	9	-23	-9	8	-10	-5	4	-13	-1	-4	-4	-6	0	-6	-11	-10	0	-7	6
G	-8	-8	-10	-10	-10	9	-13	-9	-15	-20	-10	-16	-9	-16	-10	-10	-9	-12	-15	-6
H	0	-11	0	-2	-5	-13	9	-3	-3	-6	0	0	-1	6	-1	1	-7	-4	-5	1
I	-9	-12	-16	-10	4	-9	-3	7	-12	-4	-3	-11	-10	-14	-9	-7	-10	-1	-9	-7
K	-8	-21	-7	-4	-13	-15	-3	-12	6	-11	0	-9	-7	-7	2	-7	-7	-6	-13	-8
L	-8	-5	-19	-10	-1	-20	-6	-4	-11	6	1	-17	-10	-12	-13	-9	-12	-7	-9	-7
M	-2	-10	-9	2	-4	-10	0	-3	0	1	8	-6	-6	1	-4	-9	-3	4	-11	-11
N	-7	-10	-7	-5	-4	-16	0	-11	-9	-17	-6	9	-15	-7	-8	-6	-7	-9	-12	-12
P	0	-20	-10	-9	-6	-9	-1	-10	-7	-10	-6	-15	7	-5	-6	-4	-5	-10	-9	-14
Q	-8	-10	-11	-4	0	-16	6	-14	-7	-12	1	-7	-5	7	-8	-7	-8	-3	-15	-8
R	-7	-13	-11	-3	-6	-10	-1	-9	2	-13	-4	-8	-6	-8	10	-4	-8	-7	-10	-14
S	-1	-4	-6	-7	-11	-10	1	-7	-7	-9	-9	-6	-4	-7	-4	9	-5	-8	-20	-10
T	-1	-9	-8	-8	-10	-9	-7	-10	-7	-12	-3	-7	-5	-8	-8	-5	7	-6	-16	-8
V	-9	-11	-14	-3	0	-12	-4	-1	-6	-7	4	-9	-10	-3	-7	-8	-6	6	-17	-7
W	-13	-11	-33	-35	-7	-15	-5	-9	-13	-9	-11	-12	-9	-15	-10	-20	-16	-17	8	-11
Y	-12	-7	-10	-20	6	-6	1	-7	-8	-7	-11	-12	-14	-8	-14	-10	-8	-7	-11	12

Blosum LN No Clustering

	A	C	D	E	F	G	H	I	K	L	M	N	P	Q	R	S	T	V	W	Y
A	6	-5	-4	-2	-8	-6	0	-6	-5	-6	-1	-5	0	-5	-5	-1	0	-7	-9	-9
C	-5	9	-13	-7	6	-6	-8	-8	-14	-3	-7	-7	-14	-7	-9	-3	-6	-8	-8	-5
D	-4	-13	6	1	-16	-7	0	-11	-5	-13	-6	-5	-7	-8	-8	-4	-6	-10	-23	-7
E	-2	-7	1	5	-6	-7	-1	-7	-3	-7	1	-4	-6	-3	-2	-5	-5	-2	-24	-14
F	-8	6	-16	-6	5	-7	-3	3	-9	0	-3	-3	-4	0	-4	-8	-7	0	-5	4
G	-6	-6	-7	-7	-7	6	-9	-6	-10	-14	-7	-11	-6	-11	-7	-7	-7	-9	-11	-4
H	0	-8	0	-1	-3	-9	6	-2	-2	-4	0	0	0	4	0	1	-5	-3	-3	0
I	-6	-8	-11	-7	3	-6	-2	5	-8	-2	-2	-8	-7	-10	-6	-5	-7	-1	-6	-5
K	-5	-14	-5	-3	-9	-10	-2	-8	4	-7	0	-6	-5	-5	2	-5	-5	-4	-9	-6
L	-6	-3	-13	-7	0	-14	-4	-2	-7	4	0	-12	-7	-9	-9	-6	-9	-5	-7	-5
M	-1	-7	-6	1	-3	-7	0	-2	0	0	6	-4	-4	1	-2	-7	-2	3	-7	-7
N	-5	-7	-5	-4	-3	-11	0	-8	-6	-12	-4	7	-10	-5	-5	-4	-5	-6	-9	-8
P	0	-14	-7	-6	-4	-6	0	-7	-5	-7	-4	-10	5	-4	-4	-3	-3	-7	-6	-10
Q	-5	-7	-8	-3	0	-11	4	-10	-5	-9	1	-5	-4	5	-5	-5	-6	-2	-10	-6
R	-5	-9	-8	-2	-4	-7	0	-6	2	-9	-2	-5	-4	-5	7	-3	-6	-5	-7	-9
S	-1	-3	-4	-5	-8	-7	1	-5	-5	-6	-7	-4	-3	-5	-3	6	-4	-6	-14	-7
T	0	-6	-6	-5	-7	-7	-5	-7	-5	-9	-2	-5	-3	-6	-6	-4	5	-4	-11	-6
V	-7	-8	-10	-2	0	-9	-3	-1	-4	-5	3	-6	-7	-2	-5	-6	-4	4	-12	-5
W	-9	-8	-23	-24	-5	-11	-3	-6	-9	-7	-7	-9	-6	-10	-7	-14	-11	-12	6	-7
Y	-9	-5	-7	-14	4	-4	0	-5	-6	-5	-7	-8	-10	-6	-9	-7	-6	-5	-7	9

Blosum Log10 No Clustering

	A	C	D	E	F	G	H	I	K	L	M	N	P	Q	R	S	T	V	W	Y
A	2	-2	-2	-1	-3	-2	0	-3	-2	-3	-1	-2	0	-2	-2	0	0	-3	-4	-4
C	-2	4	-6	-3	3	-2	-3	-4	-6	-1	-3	-3	-6	-3	-4	-1	-3	-3	-3	-2
D	-2	-6	3	1	-7	-3	0	-5	-2	-6	-3	-2	-3	-3	-3	-2	-2	-4	-10	-3
E	-1	-3	1	2	-3	-3	0	-3	-1	-3	1	-2	-3	-1	-1	-2	-2	-1	-11	-6
F	-3	3	-7	-3	2	-3	-1	1	-4	0	-1	-1	-2	0	-2	-3	-3	0	-2	2
G	-2	-2	-3	-3	-3	3	-4	-3	-4	-6	-3	-5	-3	-5	-3	-3	-3	-4	-5	-2
H	0	-3	0	0	-1	-4	3	-1	-1	-2	0	0	0	2	0	0	-2	-1	-1	0
I	-3	-4	-5	-3	1	-3	-1	2	-4	-1	-1	-3	-3	-4	-3	-2	-3	0	-3	-2
K	-2	-6	-2	-1	-4	-4	-1	-4	2	-3	0	-3	-2	-2	1	-2	-2	-2	-4	-3
L	-3	-1	-6	-3	0	-6	-2	-1	-3	2	0	-5	-3	-4	-4	-3	-4	-2	-3	-2
M	-1	-3	-3	1	-1	-3	0	-1	0	0	2	-2	-2	0	-1	-3	-1	1	-3	-3
N	-2	-3	-2	-2	-1	-5	0	-3	-3	-5	-2	3	-5	-2	-2	-2	-2	-3	-4	-3
P	0	-6	-3	-3	-2	-3	0	-3	-2	-3	-2	-5	2	-2	-2	-1	-1	-3	-3	-4
Q	-2	-3	-3	-1	0	-5	2	-4	-2	-4	0	-2	-2	2	-2	-2	-3	-1	-4	-2
R	-2	-4	-3	-1	-2	-3	0	-3	1	-4	-1	-2	-2	-2	3	-1	-2	-2	-3	-4
S	0	-1	-2	-2	-3	-3	0	-2	-2	-3	-3	-2	-1	-2	-1	3	-2	-2	-6	-3
T	0	-3	-2	-2	-3	-3	-2	-3	-2	-4	-1	-2	-1	-3	-2	-2	2	-2	-5	-3
V	-3	-3	-4	-1	0	-4	-1	0	-2	-2	1	-3	-3	-1	-2	-2	-2	2	-5	-2
W	-4	-3	-10	-11	-2	-5	-1	-3	-4	-3	-3	-4	-3	-4	-3	-6	-5	-5	2	-3
Y	-4	-2	-3	-6	2	-2	0	-2	-3	-2	-3	-3	-4	-2	-4	-3	-3	-2	-3	4

Distance Log2

	A	C	D	E	F	G	H	I	K	L	M	N	P	Q	R	S	T	V	W	Y
A	4	13	10	8	19	11	12	10	9	10	12	11	6	10	12	8	7	11	13	15
C	13	6	18	13	11	13	20	14	18	10	19	14	18	13	17	11	13	13	14	14
D	10	18	4	6	25	12	12	15	9	15	16	11	12	12	14	10	10	13	23	14
E	8	13	6	3	18	12	12	10	7	10	10	9	10	8	9	10	9	7	23	18
F	19	11	25	18	18	19	21	11	19	13	20	16	16	13	18	20	18	13	17	12
G	11	13	12	12	19	4	19	11	13	16	17	15	11	14	13	13	11	12	14	12
H	12	20	12	12	21	19	14	13	12	14	17	12	12	9	14	12	15	13	14	14
I	10	14	15	10	11	11	13	3	11	7	12	12	11	12	12	10	10	6	10	12
K	9	18	9	7	19	13	12	11	2	9	10	10	9	8	5	10	8	8	11	12
L	10	10	15	10	13	16	14	7	9	2	10	14	10	11	13	10	11	8	10	11
M	12	19	16	10	20	17	17	12	10	10	13	15	14	10	14	16	12	8	16	19
N	11	14	11	9	16	15	12	12	10	14	15	4	14	10	12	11	10	11	13	15
P	6	18	12	10	16	11	12	11	9	10	14	14	3	8	10	9	8	10	10	15
Q	10	13	12	8	13	14	9	12	8	11	10	10	8	3	11	10	10	7	13	12
R	12	17	14	9	18	13	14	12	5	13	14	12	10	11	5	10	11	10	12	17
S	8	11	10	10	20	13	12	10	10	10	16	11	9	10	10	4	9	10	17	14
T	7	13	10	9	18	11	15	10	8	11	12	10	8	10	11	9	3	8	14	12
V	11	13	13	7	13	12	13	6	8	8	8	11	10	7	10	10	8	3	14	11
W	13	14	23	23	17	14	14	10	11	10	16	13	10	13	12	17	14	14	3	14
Y	15	14	14	18	12	12	14	12	12	11	19	15	15	12	17	14	12	11	14	5

Distance LN

	A	C	D	E	F	G	H	I	K	L	M	N	P	Q	R	S	T	V	W	Y
A	2	9	6	5	13	7	8	7	6	6	8	7	4	7	8	5	4	7	9	10
C	9	4	12	9	7	9	13	9	12	6	13	10	12	9	11	8	8	9	10	10
D	6	12	2	4	17	8	8	10	6	10	11	7	8	8	9	7	7	9	16	9
E	5	9	4	2	12	8	8	7	5	7	7	6	7	5	6	7	6	4	16	12
F	13	7	17	12	12	13	14	7	13	8	14	11	11	9	12	13	12	8	11	8
G	7	9	8	8	13	2	13	7	9	11	11	10	7	10	9	8	7	8	10	8
H	8	13	8	8	14	13	9	9	8	9	11	8	8	6	9	8	10	9	9	9
I	7	9	10	7	7	7	9	2	7	4	8	8	7	8	8	7	7	4	7	8
K	6	12	6	5	13	9	8	7	1	6	7	7	6	5	3	6	5	5	8	8
L	6	6	10	7	8	11	9	4	6	1	6	10	7	7	9	7	7	5	6	7
M	8	13	11	7	14	11	11	8	7	6	9	10	9	7	10	11	8	6	11	13
N	7	10	7	6	11	10	8	8	7	10	10	2	10	7	8	7	7	7	9	10
P	4	12	8	7	11	7	8	7	6	7	9	10	2	6	7	6	5	7	7	10
Q	7	9	8	5	9	10	6	8	5	7	7	7	6	2	7	7	6	4	9	8
R	8	11	9	6	12	9	9	8	3	9	10	8	7	7	3	7	8	7	8	11
S	5	8	7	7	13	8	8	7	6	7	11	7	6	7	7	2	6	7	11	9
T	4	8	7	6	12	7	10	7	5	7	8	7	5	6	8	6	2	5	9	8
V	7	9	9	4	8	8	9	4	5	5	6	7	7	4	7	7	5	1	9	8
W	9	10	16	16	11	10	9	7	8	6	11	9	7	9	8	11	9	9	2	9
Y	10	10	9	12	8	8	9	8	8	7	13	10	10	8	11	9	8	8	9	3

Distance Log10

	A	C	D	E	F	G	H	I	K	L	M	N	P	Q	R	S	T	V	W	Y
A	0	3	2	2	5	3	3	2	2	2	3	3	1	2	3	2	1	2	3	4
C	3	1	5	3	3	3	5	4	5	2	5	4	5	3	4	3	3	3	4	4
D	2	5	0	1	7	3	3	4	2	4	4	3	3	3	3	2	2	3	6	3
E	2	3	1	0	5	3	3	2	1	2	2	2	2	2	2	2	2	1	6	5
F	5	3	7	5	5	5	6	3	5	3	5	4	4	3	5	5	5	3	4	3
G	3	3	3	3	5	0	5	3	3	4	4	4	3	4	3	3	3	3	4	3
H	3	5	3	3	6	5	3	3	3	3	4	3	3	2	3	3	4	3	4	3
I	2	4	4	2	3	3	3	0	3	1	3	3	3	3	3	2	2	1	2	3
K	2	5	2	1	5	3	3	3	0	2	2	2	2	2	1	2	2	2	3	3
L	2	2	4	2	3	4	3	1	2	0	2	4	2	3	3	2	3	2	2	3
M	3	5	4	2	5	4	4	3	2	2	3	4	3	2	4	4	3	2	4	5
N	3	4	3	2	4	4	3	3	2	4	4	0	4	2	3	3	2	3	3	4
P	1	5	3	2	4	3	3	3	2	2	3	4	0	2	2	2	2	2	2	4
Q	2	3	3	2	3	4	2	3	2	3	2	2	2	0	3	2	2	1	3	3
R	3	4	3	2	5	3	3	3	1	3	4	3	2	3	1	2	3	2	3	4
S	2	3	2	2	5	3	3	2	2	2	4	3	2	2	2	1	2	2	4	4
T	1	3	2	2	5	3	4	2	2	3	3	2	2	2	3	2	0	2	3	3
V	2	3	3	1	3	3	3	1	2	2	2	3	2	1	2	2	2	0	3	3
W	3	4	6	6	4	4	4	2	3	2	4	3	2	3	3	4	3	3	0	3
Y	4	4	3	5	3	3	3	3	3	3	5	4	4	3	4	4	3	3	3	1

Observed Probability of Transition

	A	C	D	E	F	G	H	I	K	L	M	N	P	Q	R	S	T	V	W	Y
A	3.57611%	0.00739%	0.05632%	0.18854%	0.00007%	0.02065%	0.00899%	0.03508%	0.07118%	0.05978%	0.01046%	0.03067%	0.61558%	0.04664%	0.01625%	0.23488%	0.52491%	0.03430%	0.00631%	0.00162%
C	0.00739%	1.09611%	0.00014%	0.00491%	0.02129%	0.00517%	0.00005%	0.00287%	0.00021%	0.05636%	0.00013%	0.00256%	0.00016%	0.00590%	0.00053%	0.01758%	0.00756%	0.00443%	0.00272%	0.00260%
D	0.05632%	0.00014%	3.49430%	1.06263%	0.00000%	0.01051%	0.00899%	0.00203%	0.09774%	0.00121%	0.00068%	0.02937%	0.01554%	0.01396%	0.00342%	0.03836%	0.03664%	0.00701%	0.00000%	0.00375%
E	0.18854%	0.00491%	1.06263%	5.49750%	0.00025%	0.01581%	0.00945%	0.03479%	0.37015%	0.04693%	0.05504%	0.07726%	0.03707%	0.26626%	0.08951%	0.04155%	0.07272%	0.42021%	0.00000%	0.00015%
F	0.00007%	0.02129%	0.00000%	0.00025%	0.00026%	0.00010%	0.00001%	0.02910%	0.00010%	0.00843%	0.00004%	0.00069%	0.00069%	0.00600%	0.00023%	0.00006%	0.00019%	0.00841%	0.00053%	0.01003%
G	0.02065%	0.00517%	0.01051%	0.01581%	0.00010%	3.72707%	0.00011%	0.02520%	0.00602%	0.00092%	0.00050%	0.00126%	0.02265%	0.00216%	0.00481%	0.00772%	0.02124%	0.01056%	0.00237%	0.01317%
H	0.00899%	0.00005%	0.00899%	0.00945%	0.00001%	0.00011%	0.00342%	0.00652%	0.00934%	0.00409%	0.00046%	0.00947%	0.01240%	0.12774%	0.00393%	0.01076%	0.00144%	0.00596%	0.00288%	0.00372%
I	0.03508%	0.00287%	0.00203%	0.03479%	0.02910%	0.02520%	0.00652%	6.48673%	0.02772%	0.52014%	0.01145%	0.01205%	0.02595%	0.00870%	0.01396%	0.04274%	0.03873%	0.93477%	0.03750%	0.01529%
K	0.07118%	0.00021%	0.09774%	0.37015%	0.00010%	0.00602%	0.00934%	0.02772%	10.7052%	0.07036%	0.04919%	0.04430%	0.13665%	0.15581%	1.11539%	0.06377%	0.16929%	0.24956%	0.01874%	0.01676%
L	0.05978%	0.05636%	0.00121%	0.04693%	0.00843%	0.00092%	0.00409%	0.52014%	0.07036%	11.5566%	0.06396%	0.00253%	0.04790%	0.02398%	0.00528%	0.03546%	0.02513%	0.22613%	0.05636%	0.03161%
M	0.01046%	0.00013%	0.00068%	0.05504%	0.00004%	0.00050%	0.00046%	0.01145%	0.04919%	0.06396%	0.00714%	0.00199%	0.00331%	0.04408%	0.00264%	0.00055%	0.00928%	0.14698%	0.00062%	0.00013%
N	0.03067%	0.00256%	0.02937%	0.07726%	0.00069%	0.00126%	0.00947%	0.01205%	0.04430%	0.00253%	0.00199%	3.43758%	0.00267%	0.04424%	0.01091%	0.02766%	0.04764%	0.03053%	0.00610%	0.00175%
P	0.61558%	0.00016%	0.01554%	0.03707%	0.00069%	0.02265%	0.01240%	0.02595%	0.13665%	0.04790%	0.00331%	0.00267%	5.89561%	0.14349%	0.03951%	0.10718%	0.20354%	0.03798%	0.03904%	0.00145%
Q	0.04664%	0.00590%	0.01396%	0.26626%	0.00600%	0.00216%	0.12774%	0.00870%	0.15581%	0.02398%	0.04408%	0.04424%	0.14349%	6.35708%	0.02178%	0.04843%	0.05754%	0.43644%	0.00516%	0.01168%
R	0.01625%	0.00053%	0.00342%	0.08951%	0.00023%	0.00481%	0.00393%	0.01396%	1.11539%	0.00528%	0.00264%	0.01091%	0.03951%	0.02178%	1.44289%	0.03932%	0.01867%	0.03650%	0.00960%	0.00049%
S	0.23488%	0.01758%	0.03836%	0.04155%	0.00006%	0.00772%	0.01076%	0.04274%	0.06377%	0.03546%	0.00055%	0.02766%	0.10718%	0.04843%	0.03932%	3.05123%	0.08763%	0.04005%	0.00047%	0.00297%
T	0.52491%	0.00756%	0.03664%	0.07272%	0.00019%	0.02124%	0.00144%	0.03873%	0.16929%	0.02513%	0.00928%	0.04764%	0.20354%	0.05754%	0.01867%	0.08763%	6.57412%	0.17601%	0.00345%	0.01029%
V	0.03430%	0.00443%	0.00701%	0.42021%	0.00841%	0.01056%	0.00596%	0.93477%	0.24956%	0.22613%	0.14698%	0.03053%	0.03798%	0.43644%	0.03650%	0.04005%	0.17601%	8.32961%	0.00320%	0.01906%
W	0.00631%	0.00272%	0.00000%	0.00000%	0.00053%	0.00237%	0.00288%	0.03750%	0.01874%	0.05636%	0.00062%	0.00610%	0.03904%	0.00516%	0.00960%	0.00047%	0.00345%	0.00320%	5.88611%	0.00405%
Y	0.00162%	0.00260%	0.00375%	0.00015%	0.01003%	0.01317%	0.00372%	0.01529%	0.01676%	0.03161%	0.00013%	0.00175%	0.00145%	0.01168%	0.00049%	0.00297%	0.01029%	0.01906%	0.00405%	1.23533%

Expected Probability of Transition

	A	C	D	E	F	G	H	I	K	L	M	N	P	Q	R	S	T	V	W	Y
A	0.20802%	0.10649%	0.38207%	0.62888%	0.00396%	0.34778%	0.01063%	0.67493%	1.09841%	1.11287%	0.01896%	0.33107%	0.60588%	0.64693%	0.19697%	0.31697%	0.66864%	0.88881%	0.54601%	0.11955%
C	0.10649%	0.01362%	0.09779%	0.16096%	0.00101%	0.08901%	0.00272%	0.17275%	0.28114%	0.28485%	0.00485%	0.08474%	0.15508%	0.16559%	0.05041%	0.08113%	0.17114%	0.22750%	0.13975%	0.03060%
D	0.38207%	0.09779%	0.17543%	0.57752%	0.00363%	0.31937%	0.00976%	0.61982%	1.00870%	1.02198%	0.01741%	0.30403%	0.55640%	0.59410%	0.18088%	0.29108%	0.61404%	0.81622%	0.50142%	0.10979%
E	0.62888%	0.16096%	0.57752%	0.47529%	0.00598%	0.52569%	0.01608%	1.02020%	1.66031%	1.68217%	0.02867%	0.50044%	0.91582%	0.97788%	0.29773%	0.47912%	1.01070%	1.34349%	0.82532%	0.18071%
F	0.00396%	0.00101%	0.00363%	0.00598%	0.00001%	0.00331%	0.00010%	0.00642%	0.01045%	0.01059%	0.00018%	0.00315%	0.00576%	0.00615%	0.00187%	0.00301%	0.00636%	0.00846%	0.00519%	0.00113%
G	0.34778%	0.08901%	0.31937%	0.52569%	0.00331%	0.14535%	0.00889%	0.56419%	0.91817%	0.93026%	0.01585%	0.27675%	0.50646%	0.54078%	0.16465%	0.26496%	0.55893%	0.74297%	0.45641%	0.09994%
H	0.01063%	0.00272%	0.00976%	0.01608%	0.00010%	0.00889%	0.00013%	0.01725%	0.02808%	0.02845%	0.00048%	0.00846%	0.01549%	0.01654%	0.00503%	0.00810%	0.01709%	0.02272%	0.01396%	0.00305%
I	0.67493%	0.17275%	0.61982%	1.02020%	0.00642%	0.56419%	0.01725%	0.54746%	1.78190%	1.80536%	0.03076%	0.53709%	0.98290%	1.04950%	0.31953%	0.51421%	1.08472%	1.44188%	0.88577%	0.19395%
K	1.09841%	0.28114%	1.00870%	1.66031%	0.01045%	0.91817%	0.02808%	1.78190%	1.44995%	2.93809%	0.05007%	0.87407%	1.59959%	1.70798%	0.52002%	0.83684%	1.76530%	2.34656%	1.44152%	0.31564%
L	1.11287%	0.28485%	1.02198%	1.68217%	0.01059%	0.93026%	0.02845%	1.80536%	2.93809%	1.48838%	0.05073%	0.88558%	1.62065%	1.73047%	0.52686%	0.84785%	1.78854%	2.37745%	1.46050%	0.31980%
M	0.01896%	0.00485%	0.01741%	0.02867%	0.00018%	0.01585%	0.00048%	0.03076%	0.05007%	0.05073%	0.00043%	0.01509%	0.02762%	0.02949%	0.00898%	0.01445%	0.03048%	0.04052%	0.02489%	0.00545%
N	0.33107%	0.08474%	0.30403%	0.50044%	0.00315%	0.27675%	0.00846%	0.53709%	0.87407%	0.88558%	0.01509%	0.13172%	0.48213%	0.51480%	0.15674%	0.25223%	0.53208%	0.70728%	0.43449%	0.09514%
P	0.60588%	0.15508%	0.55640%	0.91582%	0.00576%	0.50646%	0.01549%	0.98290%	1.59959%	1.62065%	0.02762%	0.48213%	0.44116%	0.94212%	0.28684%	0.46160%	0.97373%	1.29436%	0.79514%	0.17411%
Q	0.64693%	0.16559%	0.59410%	0.97788%	0.00615%	0.54078%	0.01654%	1.04950%	1.70798%	1.73047%	0.02949%	0.51480%	0.94212%	0.50298%	0.30628%	0.49288%	1.03972%	1.38207%	0.84902%	0.18590%
R	0.19697%	0.05041%	0.18088%	0.29773%	0.00187%	0.16465%	0.00503%	0.31953%	0.52002%	0.52686%	0.00898%	0.15674%	0.28684%	0.30628%	0.04662%	0.15006%	0.31656%	0.42079%	0.25850%	0.05660%
S	0.31697%	0.08113%	0.29108%	0.47912%	0.00301%	0.26496%	0.00810%	0.51421%	0.83684%	0.84785%	0.01445%	0.25223%	0.46160%	0.49288%	0.15006%	0.12074%	0.50942%	0.67715%	0.41598%	0.09108%
T	0.66864%	0.17114%	0.61404%	1.01070%	0.00636%	0.55893%	0.01709%	1.08472%	1.76530%	1.78854%	0.03048%	0.53208%	0.97373%	1.03972%	0.31656%	0.50942%	0.53730%	1.42845%	0.87751%	0.19214%
V	0.88881%	0.22750%	0.81622%	1.34349%	0.00846%	0.74297%	0.02272%	1.44188%	2.34656%	2.37745%	0.04052%	0.70728%	1.29436%	1.38207%	0.42079%	0.67715%	1.42845%	0.94939%	1.16645%	0.25541%
W	0.54601%	0.13975%	0.50142%	0.82532%	0.00519%	0.45641%	0.01396%	0.88577%	1.44152%	1.46050%	0.02489%	0.43449%	0.79514%	0.84902%	0.25850%	0.41598%	0.87751%	1.16645%	0.35828%	0.15690%
Y	0.11955%	0.03060%	0.10979%	0.18071%	0.00113%	0.09994%	0.00305%	0.19395%	0.31564%	0.31980%	0.00545%	0.09514%	0.17411%	0.18590%	0.05660%	0.09108%	0.19214%	0.25541%	0.15690%	0.01717%

Transition Count

	A	C	D	E	F	G	H	I	K	L	M	N	P	Q	R	S	T	V	W	Y
A	43265739	89438	681432	2281125	943	249900	108871	424530	861273	723360	126559	371146	7447686	564274	196642	2841717	6350659	415020	76431	19607
C	89438	13261359	1721	59437	257639	62613	703	34786	2622	681875	1583	30984	1986	71398	6519	212784	91472	53610	32909	31506
D	681432	1721	42275982	12856372	16	127152	108847	24656	1182514	14705	8297	355368	188064	168947	41374	464179	443299	84845	68	45448
E	2281125	59437	12856372	66511791	3091	191365	114326	421015	4478285	567874	665912	934752	448521	3221356	1083040	502695	879866	5084013	52	1881
F	943	257639	16	3091	3222	1286	227	352165	1217	102055	515	8357	8370	72590	2810	761	2383	101840	6418	121430
G	249900	62613	127152	191365	1286	45092091	1402	304882	72915	11139	6044	15353	274103	26147	58251	93495	257087	127799	28723	159432
H	108871	703	108847	114326	227	1402	41425	78955	113051	49514	5601	114594	150041	1545580	47553	130252	17516	72102	34861	45049
I	424530	34786	24656	421015	352165	304882	78955	78479944	335413	6292982	138599	145855	313969	105286	168919	517193	468683	11309413	453699	185080
K	861273	2622	1182514	4478285	1217	72915	113051	335413	129517551	851345	595184	535991	1653371	1885152	13494653	771577	2048267	3019380	226780	202864
L	723360	681875	14705	567874	102055	11139	49514	6292982	851345	139818464	773858	30633	579523	290130	63887	429011	304086	2735890	681911	382474
M	126559	1583	8297	665912	515	6044	5601	138599	595184	773858	86497	24084	40104	533374	31992	6731	112277	1778337	7553	1623
N	371146	30984	355368	934752	8357	15353	114594	145855	535991	30633	24084	41589701	32374	535308	132107	334661	576430	369436	73850	21203
P	7447686	1986	188064	448521	8370	274103	150041	313969	1653371	579523	40104	32374	71328353	1736080	478070	1296743	2462650	459564	472415	17655
Q	564274	71398	168947	3221356	72590	26147	1545580	105286	1885152	290130	533374	535308	1736080	76911377	263613	586036	696175	5280384	62475	141342
R	196642	6519	41374	1083040	2810	58251	47553	168919	13494653	63887	31992	132107	478070	263613	17456964	475807	225989	441654	116171	5962
S	2841717	212784	464179	502695	761	93495	130252	517193	771577	429011	6731	334661	1296743	586036	475807	36915461	1060190	484574	5725	35969
T	6350659	91472	443299	879866	2383	257087	17516	468683	2048267	304086	112277	576430	2462650	696175	225989	1060190	79537238	2129551	41789	124541
V	415020	53610	84845	5084013	101840	127799	72102	11309413	3019380	2735890	1778337	369436	459564	5280384	441654	484574	2129551	100776138	38780	230671
W	76431	32909	68	52	6418	28723	34861	453699	226780	681911	7553	73850	472415	62475	116171	5725	41789	38780	71213355	49110
Y	19607	31506	45448	1881	121430	159432	45049	185080	202864	382474	1623	21203	17655	141342	5962	35969	124541	230671	49110	14945758

Number of Amino Acids in Alignment

	A	C	D	E	F	G	H	I	K	L	M	N	P	Q	R	S	T	V	W	Y
A	22520	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
C	-	5358	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
D	-	-	14823	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
E	-	-	-	31729	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
F	-	-	-	-	195	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
G	-	-	-	-	-	16715	-	-	-	-	-	-	-	-	-	-	-	-	-	-
H	-	-	-	-	-	-	488	-	-	-	-	-	-	-	-	-	-	-	-	-
I	-	-	-	-	-	-	-	28563	-	-	-	-	-	-	-	-	-	-	-	-
K	-	-	-	-	-	-	-	-	46828	-	-	-	-	-	-	-	-	-	-	-
L	-	-	-	-	-	-	-	-	-	52972	-	-	-	-	-	-	-	-	-	-
M	-	-	-	-	-	-	-	-	-	-	772	-	-	-	-	-	-	-	-	-
N	-	-	-	-	-	-	-	-	-	-	-	15566	-	-	-	-	-	-	-	-
P	-	-	-	-	-	-	-	-	-	-	-	-	22817	-	-	-	-	-	-	-
Q	-	-	-	-	-	-	-	-	-	-	-	-	-	26603	-	-	-	-	-	-
R	-	-	-	-	-	-	-	-	-	-	-	-	-	-	11030	-	-	-	-	-
S	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	13227	-	-	-	-
T	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	28331	-	-	-
V	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	36443	-	-
W	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	20652	-
Y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	5689

Percentage of Amino Acids in Alignment

	A	C	D	E	F	G	H	I	K	L	M	N	P	Q	R	S	T	V	W	Y
A	5.61%	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
C	-	1.33%	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
D	-	-	3.69%	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
E	-	-	-	7.90%	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
F	-	-	-	-	0.04%	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
G	-	-	-	-	-	4.16%	-	-	-	-	-	-	-	-	-	-	-	-	-	-
H	-	-	-	-	-	-	0.12%	-	-	-	-	-	-	-	-	-	-	-	-	-
I	-	-	-	-	-	-	-	7.11%	-	-	-	-	-	-	-	-	-	-	-	-
K	-	-	-	-	-	-	-	-	11.6%	-	-	-	-	-	-	-	-	-	-	-
L	-	-	-	-	-	-	-	-	-	13.1%	-	-	-	-	-	-	-	-	-	-
M	-	-	-	-	-	-	-	-	-	-	0.19%	-	-	-	-	-	-	-	-	-
N	-	-	-	-	-	-	-	-	-	-	-	3.87%	-	-	-	-	-	-	-	-
P	-	-	-	-	-	-	-	-	-	-	-	-	5.68%	-	-	-	-	-	-	-
Q	-	-	-	-	-	-	-	-	-	-	-	-	-	6.62%	-	-	-	-	-	-
R	-	-	-	-	-	-	-	-	-	-	-	-	-	-	2.74%	-	-	-	-	-
S	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	3.29%	-	-	-	-
T	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	7.05%	-	-	-
V	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	9.08%	-	-
W	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	5.14%	-
Y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.41%