Blosum Log2 No Clustering

  A C D E F G H I K L M N P Q R S T V W Y
A 9 1 -4 -2 -4 -2 -5 -4 -4 -4 -2 -4 -6 -2 -4 -1 -1 -4 -5 -7
C 1 8 -5 -4 -2 -3 3 1 -3 2 -1 -2 -6 -1 -2 4 -1 -1 0 2
D -4 -5 7 -1 -5 -6 -3 -9 -4 -8 -8 -2 -5 -6 -5 -4 -6 -8 -8 -8
E -2 -4 -1 8 -8 -3 -5 -6 -2 -6 -5 -5 -5 -1 -3 -4 -5 -6 -4 -6
F -4 -2 -5 -8 8 -7 -3 -4 -9 -2 -5 -6 -10 -6 -7 -5 -7 -3 -4 -1
G -2 -3 -6 -3 -7 8 -8 -6 -5 -6 -8 -4 -6 -5 -4 -3 -4 -6 -7 -6
H -5 3 -3 -5 -3 -8 10 -6 -5 -3 -7 -3 -6 -3 -5 -3 -4 -7 -3 -2
I -4 1 -9 -6 -4 -6 -6 7 -6 -2 0 -9 -8 -6 -5 -5 -2 1 -9 -6
K -4 -3 -4 -2 -9 -5 -5 -6 6 -6 -4 -3 -5 -3 -1 -4 -5 -7 -7 -7
L -4 2 -8 -6 -2 -6 -3 -2 -6 6 -1 -7 -6 -6 -5 -5 -4 -2 -2 -5
M -2 -1 -8 -5 -5 -8 -7 0 -4 -1 11 -9 -8 -2 -4 -6 -3 1 -6 -6
N -4 -2 -2 -5 -6 -4 -3 -9 -3 -7 -9 8 -4 -5 -6 -3 -3 -7 -8 -8
P -6 -6 -5 -5 -10 -6 -6 -8 -5 -6 -8 -4 7 -8 -5 -4 -8 -6 -6 -9
Q -2 -1 -6 -1 -6 -5 -3 -6 -3 -6 -2 -5 -8 8 -4 -3 -5 -6 -9 -9
R -4 -2 -5 -3 -7 -4 -5 -5 -1 -5 -4 -6 -5 -4 8 -3 -5 -6 -7 -9
S -1 4 -4 -4 -5 -3 -3 -5 -4 -5 -6 -3 -4 -3 -3 8 -2 -5 -2 -6
T -1 -1 -6 -5 -7 -4 -4 -2 -5 -4 -3 -3 -8 -5 -5 -2 7 -5 -8 -3
V -4 -1 -8 -6 -3 -6 -7 1 -7 -2 1 -7 -6 -6 -6 -5 -5 7 -4 -4
W -5 0 -8 -4 -4 -7 -3 -9 -7 -2 -6 -8 -6 -9 -7 -2 -8 -4 10 -2
Y -7 2 -8 -6 -1 -6 -2 -6 -7 -5 -6 -8 -9 -9 -9 -6 -3 -4 -2 8

Blosum LN No Clustering

  A C D E F G H I K L M N P Q R S T V W Y
A 6 1 -3 -2 -3 -2 -3 -3 -3 -3 -2 -3 -4 -1 -3 -1 -1 -3 -3 -5
C 1 5 -4 -3 -1 -2 2 0 -2 1 -1 -2 -4 -1 -1 3 -1 -1 0 1
D -3 -4 5 0 -4 -4 -2 -6 -3 -6 -5 -1 -4 -4 -4 -3 -4 -6 -6 -5
E -2 -3 0 5 -5 -2 -3 -4 -1 -4 -3 -3 -4 -1 -2 -3 -3 -4 -3 -4
F -3 -1 -4 -5 5 -5 -2 -2 -6 -2 -3 -4 -7 -4 -5 -4 -5 -2 -3 -1
G -2 -2 -4 -2 -5 5 -5 -4 -3 -4 -6 -2 -4 -4 -3 -2 -3 -4 -5 -4
H -3 2 -2 -3 -2 -5 7 -4 -3 -2 -5 -2 -4 -2 -3 -2 -3 -5 -2 -1
I -3 0 -6 -4 -2 -4 -4 5 -4 -1 0 -6 -5 -4 -3 -4 -1 1 -6 -4
K -3 -2 -3 -1 -6 -3 -3 -4 4 -4 -3 -2 -3 -2 0 -3 -4 -5 -5 -5
L -3 1 -6 -4 -2 -4 -2 -1 -4 4 -1 -5 -4 -4 -3 -3 -3 -2 -1 -3
M -2 -1 -5 -3 -3 -6 -5 0 -3 -1 8 -6 -5 -1 -3 -4 -2 1 -4 -4
N -3 -2 -1 -3 -4 -2 -2 -6 -2 -5 -6 6 -3 -3 -4 -2 -2 -5 -5 -5
P -4 -4 -4 -4 -7 -4 -4 -5 -3 -4 -5 -3 5 -5 -3 -3 -6 -4 -5 -6
Q -1 -1 -4 -1 -4 -4 -2 -4 -2 -4 -1 -3 -5 5 -3 -2 -4 -4 -6 -6
R -3 -1 -4 -2 -5 -3 -3 -3 0 -3 -3 -4 -3 -3 5 -2 -3 -4 -5 -6
S -1 3 -3 -3 -4 -2 -2 -4 -3 -3 -4 -2 -3 -2 -2 5 -2 -4 -2 -4
T -1 -1 -4 -3 -5 -3 -3 -1 -4 -3 -2 -2 -6 -4 -3 -2 5 -3 -5 -2
V -3 -1 -6 -4 -2 -4 -5 1 -5 -2 1 -5 -4 -4 -4 -4 -3 5 -3 -3
W -3 0 -6 -3 -3 -5 -2 -6 -5 -1 -4 -5 -5 -6 -5 -2 -5 -3 7 -2
Y -5 1 -5 -4 -1 -4 -1 -4 -5 -3 -4 -5 -6 -6 -6 -4 -2 -3 -2 6

Blosum Log10 No Clustering

  A C D E F G H I K L M N P Q R S T V W Y
A 3 0 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -2 0 -1 0 0 -1 -1 -2
C 0 2 -2 -1 0 -1 1 0 -1 1 0 -1 -2 0 -1 1 0 0 0 1
D -1 -2 2 0 -2 -2 -1 -3 -1 -2 -2 -1 -2 -2 -2 -1 -2 -3 -2 -2
E -1 -1 0 2 -2 -1 -1 -2 -1 -2 -2 -1 -2 0 -1 -1 -1 -2 -1 -2
F -1 0 -2 -2 2 -2 -1 -1 -3 -1 -1 -2 -3 -2 -2 -2 -2 -1 -1 0
G -1 -1 -2 -1 -2 2 -2 -2 -1 -2 -3 -1 -2 -2 -1 -1 -1 -2 -2 -2
H -1 1 -1 -1 -1 -2 3 -2 -1 -1 -2 -1 -2 -1 -1 -1 -1 -2 -1 -1
I -1 0 -3 -2 -1 -2 -2 2 -2 0 0 -3 -2 -2 -1 -2 -1 0 -3 -2
K -1 -1 -1 -1 -3 -1 -1 -2 2 -2 -1 -1 -1 -1 0 -1 -2 -2 -2 -2
L -1 1 -2 -2 -1 -2 -1 0 -2 2 0 -2 -2 -2 -1 -1 -1 -1 -1 -1
M -1 0 -2 -2 -1 -3 -2 0 -1 0 3 -3 -2 -1 -1 -2 -1 0 -2 -2
N -1 -1 -1 -1 -2 -1 -1 -3 -1 -2 -3 3 -1 -1 -2 -1 -1 -2 -2 -2
P -2 -2 -2 -2 -3 -2 -2 -2 -1 -2 -2 -1 2 -2 -1 -1 -2 -2 -2 -3
Q 0 0 -2 0 -2 -2 -1 -2 -1 -2 -1 -1 -2 2 -1 -1 -2 -2 -3 -3
R -1 -1 -2 -1 -2 -1 -1 -1 0 -1 -1 -2 -1 -1 2 -1 -1 -2 -2 -3
S 0 1 -1 -1 -2 -1 -1 -2 -1 -1 -2 -1 -1 -1 -1 2 -1 -2 -1 -2
T 0 0 -2 -1 -2 -1 -1 -1 -2 -1 -1 -1 -2 -2 -1 -1 2 -1 -2 -1
V -1 0 -3 -2 -1 -2 -2 0 -2 -1 0 -2 -2 -2 -2 -2 -1 2 -1 -1
W -1 0 -2 -1 -1 -2 -1 -3 -2 -1 -2 -2 -2 -3 -2 -1 -2 -1 3 -1
Y -2 1 -2 -2 0 -2 -1 -2 -2 -1 -2 -2 -3 -3 -3 -2 -1 -1 -1 2

Distance Log2

  A C D E F G H I K L M N P Q R S T V W Y
A 4 11 9 8 9 8 11 9 8 8 10 10 10 8 9 8 8 9 11 11
C 11 12 13 12 11 12 10 10 11 9 13 12 13 11 12 9 11 11 12 10
D 9 13 3 7 9 9 9 10 8 10 12 8 8 9 9 8 9 10 11 10
E 8 12 7 4 10 8 10 9 7 9 11 9 9 7 8 9 9 9 10 10
F 9 11 9 10 3 10 9 8 10 7 11 9 11 9 10 9 10 8 9 7
G 8 12 9 8 10 3 12 9 8 9 12 9 9 9 9 8 8 9 11 10
H 11 10 9 10 9 12 5 11 9 9 13 10 10 9 10 9 9 11 10 9
I 9 10 10 9 8 9 11 3 8 6 8 11 10 9 9 9 7 6 12 9
K 8 11 8 7 10 8 9 8 3 8 10 7 8 7 6 8 8 9 10 9
L 8 9 10 9 7 9 9 6 8 3 8 9 8 9 8 8 8 7 8 8
M 10 13 12 11 11 12 13 8 10 8 6 13 12 9 10 11 10 8 12 11
N 10 12 8 9 9 9 10 11 7 9 13 4 9 9 10 8 8 10 12 11
P 10 13 8 9 11 9 10 10 8 8 12 9 3 10 8 8 10 9 10 11
Q 8 11 9 7 9 9 9 9 7 9 9 9 10 4 9 8 9 9 12 11
R 9 12 9 8 10 9 10 9 6 8 10 10 8 9 4 8 9 9 11 11
S 8 9 8 9 9 8 9 9 8 8 11 8 8 8 8 4 8 9 9 10
T 8 11 9 9 10 8 9 7 8 8 10 8 10 9 9 8 3 9 11 8
V 9 11 10 9 8 9 11 6 9 7 8 10 9 9 9 9 9 3 9 9
W 11 12 11 10 9 11 10 12 10 8 12 12 10 12 11 9 11 9 5 9
Y 11 10 10 10 7 10 9 9 9 8 11 11 11 11 11 10 8 9 9 4

Distance LN

  A C D E F G H I K L M N P Q R S T V W Y
A 3 7 6 6 6 5 7 6 5 5 7 6 6 5 6 5 5 6 7 7
C 7 8 9 8 7 8 7 7 7 6 9 8 9 7 8 6 7 7 8 6
D 6 9 2 4 6 6 6 7 5 6 8 5 6 6 6 6 6 7 8 7
E 6 8 4 2 7 5 7 6 4 6 7 6 6 5 5 6 6 6 6 6
F 6 7 6 7 2 7 6 5 6 4 7 6 7 6 7 6 6 5 6 5
G 5 8 6 5 7 2 8 6 5 6 8 6 6 6 6 5 5 6 7 6
H 7 7 6 7 6 8 3 7 6 6 9 6 7 6 7 6 6 7 7 6
I 6 7 7 6 5 6 7 2 6 4 5 7 6 6 6 6 5 4 8 6
K 5 7 5 4 6 5 6 6 2 5 6 5 5 5 4 5 5 6 7 6
L 5 6 6 6 4 6 6 4 5 2 5 6 5 6 5 5 5 4 5 6
M 7 9 8 7 7 8 9 5 6 5 4 9 8 6 7 8 6 5 8 8
N 6 8 5 6 6 6 6 7 5 6 9 2 6 6 6 6 5 7 8 7
P 6 9 6 6 7 6 7 6 5 5 8 6 2 7 6 5 7 6 7 7
Q 5 7 6 5 6 6 6 6 5 6 6 6 7 2 6 5 6 6 8 7
R 6 8 6 5 7 6 7 6 4 5 7 6 6 6 2 5 6 6 7 7
S 5 6 6 6 6 5 6 6 5 5 8 6 5 5 5 2 5 6 6 6
T 5 7 6 6 6 5 6 5 5 5 6 5 7 6 6 5 2 6 7 5
V 6 7 7 6 5 6 7 4 6 4 5 7 6 6 6 6 6 2 6 6
W 7 8 8 6 6 7 7 8 7 5 8 8 7 8 7 6 7 6 3 6
Y 7 6 7 6 5 6 6 6 6 6 8 7 7 7 7 6 5 6 6 2

Distance Log10

  A C D E F G H I K L M N P Q R S T V W Y
A 1 2 2 2 2 2 3 2 2 2 2 2 2 2 2 2 2 2 2 2
C 2 3 3 3 3 3 2 2 3 2 3 3 3 3 3 2 3 3 3 2
D 2 3 0 1 2 2 2 2 2 2 3 2 2 2 2 2 2 2 3 2
E 2 3 1 0 2 2 2 2 1 2 3 2 2 1 2 2 2 2 2 2
F 2 3 2 2 0 2 2 2 2 1 3 2 3 2 2 2 2 2 2 1
G 2 3 2 2 2 0 3 2 2 2 3 2 2 2 2 2 2 2 3 2
H 3 2 2 2 2 3 1 3 2 2 3 2 2 2 2 2 2 3 2 2
I 2 2 2 2 2 2 3 0 2 1 2 3 2 2 2 2 1 1 3 2
K 2 3 2 1 2 2 2 2 0 2 2 2 2 1 1 2 2 2 2 2
L 2 2 2 2 1 2 2 1 2 0 2 2 2 2 2 2 2 1 2 2
M 2 3 3 3 3 3 3 2 2 2 1 3 3 2 2 3 2 2 3 3
N 2 3 2 2 2 2 2 3 2 2 3 0 2 2 2 2 2 2 3 3
P 2 3 2 2 3 2 2 2 2 2 3 2 0 2 2 2 2 2 2 2
Q 2 3 2 1 2 2 2 2 1 2 2 2 2 0 2 2 2 2 3 3
R 2 3 2 2 2 2 2 2 1 2 2 2 2 2 0 2 2 2 3 3
S 2 2 2 2 2 2 2 2 2 2 3 2 2 2 2 0 2 2 2 2
T 2 3 2 2 2 2 2 1 2 2 2 2 2 2 2 2 0 2 3 2
V 2 3 2 2 2 2 3 1 2 1 2 2 2 2 2 2 2 0 2 2
W 2 3 3 2 2 3 2 3 2 2 3 3 2 3 3 2 3 2 1 2
Y 2 2 2 2 1 2 2 2 2 2 3 3 2 3 3 2 2 2 2 0

Observed Probability of Transition

  A C D E F G H I K L M N P Q R S T V W Y
A 2.38597% 0.03266% 0.10010% 0.14522% 0.10248% 0.17000% 0.03060% 0.09413% 0.19488% 0.15704% 0.04267% 0.06441% 0.05590% 0.19893% 0.09992% 0.25510% 0.24904% 0.09787% 0.03317% 0.03324%
C 0.03266% 0.01503% 0.00615% 0.00883% 0.02035% 0.01228% 0.03796% 0.04935% 0.02434% 0.09795% 0.00574% 0.01266% 0.00631% 0.02334% 0.01725% 0.12102% 0.02922% 0.02595% 0.01414% 0.06092%
D 0.10010% 0.00615% 5.28846% 0.51134% 0.11982% 0.08183% 0.11217% 0.03668% 0.27267% 0.06682% 0.01296% 0.27146% 0.14811% 0.07946% 0.10161% 0.15024% 0.09677% 0.04110% 0.01865% 0.04030%
E 0.14522% 0.00883% 0.51134% 3.57544% 0.03893% 0.22249% 0.04193% 0.08296% 0.49993% 0.09124% 0.02539% 0.08233% 0.12271% 0.34221% 0.16171% 0.10965% 0.11822% 0.07093% 0.05931% 0.06171%
F 0.10248% 0.02035% 0.11982% 0.03893% 4.46148% 0.05273% 0.09591% 0.19958% 0.05681% 0.43691% 0.03053% 0.06956% 0.02127% 0.06967% 0.04617% 0.08846% 0.06730% 0.24173% 0.07932% 0.36929%
G 0.17000% 0.01228% 0.08183% 0.22249% 0.05273% 4.47020% 0.01547% 0.08478% 0.20887% 0.11575% 0.00886% 0.13474% 0.09132% 0.08587% 0.13590% 0.20142% 0.17452% 0.07777% 0.02345% 0.06482%
H 0.03060% 0.03796% 0.11217% 0.04193% 0.09591% 0.01547% 1.54521% 0.02903% 0.08315% 0.12582% 0.00520% 0.06341% 0.03698% 0.08787% 0.03848% 0.08322% 0.07037% 0.02053% 0.04008% 0.10057%
I 0.09413% 0.04935% 0.03668% 0.08296% 0.19958% 0.08478% 0.02903% 4.50844% 0.14975% 0.59288% 0.16165% 0.02521% 0.06444% 0.07944% 0.11344% 0.09863% 0.37276% 0.99081% 0.01543% 0.07614%
K 0.19488% 0.02434% 0.27267% 0.49993% 0.05681% 0.20887% 0.08315% 0.14975% 7.84149% 0.17702% 0.06058% 0.30786% 0.26523% 0.37150% 0.82094% 0.22166% 0.19618% 0.10956% 0.04442% 0.09411%
L 0.15704% 0.09795% 0.06682% 0.09124% 0.43691% 0.11575% 0.12582% 0.59288% 0.17702% 6.55219% 0.17750% 0.07008% 0.15282% 0.09972% 0.17680% 0.16148% 0.27221% 0.45784% 0.22816% 0.14711%
M 0.04267% 0.00574% 0.01296% 0.02539% 0.03053% 0.00886% 0.00520% 0.16165% 0.06058% 0.17750% 0.94236% 0.00525% 0.01480% 0.07182% 0.03567% 0.01988% 0.06803% 0.24010% 0.01021% 0.01894%
N 0.06441% 0.01266% 0.27146% 0.08233% 0.06956% 0.13474% 0.06341% 0.02521% 0.30786% 0.07008% 0.00525% 3.33083% 0.12743% 0.08639% 0.05763% 0.14128% 0.16502% 0.04328% 0.01405% 0.02866%
P 0.05590% 0.00631% 0.14811% 0.12271% 0.02127% 0.09132% 0.03698% 0.06444% 0.26523% 0.15282% 0.01480% 0.12743% 6.29900% 0.05170% 0.14616% 0.15609% 0.05052% 0.12843% 0.03785% 0.03186%
Q 0.19893% 0.02334% 0.07946% 0.34221% 0.06967% 0.08587% 0.08787% 0.07944% 0.37150% 0.09972% 0.07182% 0.08639% 0.05170% 3.96380% 0.13251% 0.15721% 0.09753% 0.07992% 0.01119% 0.02177%
R 0.09992% 0.01725% 0.10161% 0.16171% 0.04617% 0.13590% 0.03848% 0.11344% 0.82094% 0.17680% 0.03567% 0.05763% 0.14616% 0.13251% 3.86271% 0.15183% 0.12485% 0.07343% 0.02122% 0.02436%
S 0.25510% 0.12102% 0.15024% 0.10965% 0.08846% 0.20142% 0.08322% 0.09863% 0.22166% 0.16148% 0.01988% 0.14128% 0.15609% 0.15721% 0.15183% 3.56502% 0.26799% 0.09637% 0.10512% 0.05643%
T 0.24904% 0.02922% 0.09677% 0.11822% 0.06730% 0.17452% 0.07037% 0.37276% 0.19618% 0.27221% 0.06803% 0.16502% 0.05052% 0.09753% 0.12485% 0.26799% 4.52622% 0.13137% 0.02071% 0.17286%
V 0.09787% 0.02595% 0.04110% 0.07093% 0.24173% 0.07777% 0.02053% 0.99081% 0.10956% 0.45784% 0.24010% 0.04328% 0.12843% 0.07992% 0.07343% 0.09637% 0.13137% 4.51059% 0.07050% 0.13404%
W 0.03317% 0.01414% 0.01865% 0.05931% 0.07932% 0.02345% 0.04008% 0.01543% 0.04442% 0.22816% 0.01021% 0.01405% 0.03785% 0.01119% 0.02122% 0.10512% 0.02071% 0.07050% 2.03504% 0.11065%
Y 0.03324% 0.06092% 0.04030% 0.06171% 0.36929% 0.06482% 0.10057% 0.07614% 0.09411% 0.14711% 0.01894% 0.02866% 0.03186% 0.02177% 0.02436% 0.05643% 0.17286% 0.13404% 0.11065% 3.99501%

Expected Probability of Transition

  A C D E F G H I K L M N P Q R S T V W Y
A 0.12004% 0.02205% 0.44504% 0.34466% 0.38561% 0.37776% 0.14583% 0.42733% 0.68748% 0.58586% 0.10049% 0.29215% 0.49573% 0.34909% 0.35358% 0.33861% 0.40876% 0.42105% 0.17419% 0.33392%
C 0.02205% 0.00101% 0.04088% 0.03166% 0.03542% 0.03470% 0.01339% 0.03926% 0.06315% 0.05382% 0.00923% 0.02684% 0.04554% 0.03207% 0.03248% 0.03110% 0.03755% 0.03868% 0.01600% 0.03067%
D 0.44504% 0.04088% 0.41250% 0.63892% 0.71483% 0.70028% 0.27034% 0.79217% 1.27441% 1.08604% 0.18629% 0.54158% 0.91895% 0.64713% 0.65545% 0.62769% 0.75774% 0.78053% 0.32291% 0.61900%
E 0.34466% 0.03166% 0.63892% 0.24740% 0.55360% 0.54233% 0.20936% 0.61349% 0.98696% 0.84108% 0.14427% 0.41943% 0.71168% 0.50116% 0.50761% 0.48612% 0.58683% 0.60448% 0.25008% 0.47938%
F 0.38561% 0.03542% 0.71483% 0.55360% 0.30968% 0.60676% 0.23424% 0.68638% 1.10422% 0.94101% 0.16141% 0.46926% 0.79623% 0.56071% 0.56792% 0.54387% 0.65655% 0.67629% 0.27979% 0.53634%
G 0.37776% 0.03470% 0.70028% 0.54233% 0.60676% 0.29720% 0.22947% 0.67241% 1.08175% 0.92186% 0.15813% 0.45971% 0.78003% 0.54929% 0.55636% 0.53280% 0.64318% 0.66253% 0.27410% 0.52542%
H 0.14583% 0.01339% 0.27034% 0.20936% 0.23424% 0.22947% 0.04429% 0.25958% 0.41761% 0.35588% 0.06104% 0.17747% 0.30113% 0.21205% 0.21478% 0.20569% 0.24830% 0.25577% 0.10581% 0.20284%
I 0.42733% 0.03926% 0.79217% 0.61349% 0.68638% 0.67241% 0.25958% 0.38032% 1.22369% 1.04282% 0.17888% 0.52003% 0.88238% 0.62137% 0.62937% 0.60271% 0.72758% 0.74946% 0.31006% 0.59437%
K 0.68748% 0.06315% 1.27441% 0.98696% 1.10422% 1.08175% 0.41761% 1.22369% 0.98431% 1.67765% 0.28777% 0.83660% 1.41953% 0.99964% 1.01250% 0.96962% 1.17050% 1.20571% 0.49882% 0.95620%
L 0.58586% 0.05382% 1.08604% 0.84108% 0.94101% 0.92186% 0.35588% 1.04282% 1.67765% 0.71484% 0.24524% 0.71294% 1.20972% 0.85188% 0.86284% 0.82630% 0.99749% 1.02749% 0.42509% 0.81486%
M 0.10049% 0.00923% 0.18629% 0.14427% 0.16141% 0.15813% 0.06104% 0.17888% 0.28777% 0.24524% 0.02103% 0.12229% 0.20750% 0.14612% 0.14800% 0.14174% 0.17110% 0.17625% 0.07291% 0.13977%
N 0.29215% 0.02684% 0.54158% 0.41943% 0.46926% 0.45971% 0.17747% 0.52003% 0.83660% 0.71294% 0.12229% 0.17776% 0.60326% 0.42481% 0.43028% 0.41206% 0.49743% 0.51239% 0.21198% 0.40635%
P 0.49573% 0.04554% 0.91895% 0.71168% 0.79623% 0.78003% 0.30113% 0.88238% 1.41953% 1.20972% 0.20750% 0.60326% 0.51180% 0.72082% 0.73009% 0.69917% 0.84403% 0.86941% 0.35969% 0.68949%
Q 0.34909% 0.03207% 0.64713% 0.50116% 0.56071% 0.54929% 0.21205% 0.62137% 0.99964% 0.85188% 0.14612% 0.42481% 0.72082% 0.25380% 0.51413% 0.49236% 0.59436% 0.61224% 0.25329% 0.48554%
R 0.35358% 0.03248% 0.65545% 0.50761% 0.56792% 0.55636% 0.21478% 0.62937% 1.01250% 0.86284% 0.14800% 0.43028% 0.73009% 0.51413% 0.26037% 0.49869% 0.60201% 0.62012% 0.25655% 0.49179%
S 0.33861% 0.03110% 0.62769% 0.48612% 0.54387% 0.53280% 0.20569% 0.60271% 0.96962% 0.82630% 0.14174% 0.41206% 0.69917% 0.49236% 0.49869% 0.23878% 0.57652% 0.59385% 0.24568% 0.47096%
T 0.40876% 0.03755% 0.75774% 0.58683% 0.65655% 0.64318% 0.24830% 0.72758% 1.17050% 0.99749% 0.17110% 0.49743% 0.84403% 0.59436% 0.60201% 0.57652% 0.34798% 0.71689% 0.29659% 0.56853%
V 0.42105% 0.03868% 0.78053% 0.60448% 0.67629% 0.66253% 0.25577% 0.74946% 1.20571% 1.02749% 0.17625% 0.51239% 0.86941% 0.61224% 0.62012% 0.59385% 0.71689% 0.36922% 0.30551% 0.58563%
W 0.17419% 0.01600% 0.32291% 0.25008% 0.27979% 0.27410% 0.10581% 0.31006% 0.49882% 0.42509% 0.07291% 0.21198% 0.35969% 0.25329% 0.25655% 0.24568% 0.29659% 0.30551% 0.06319% 0.24228%
Y 0.33392% 0.03067% 0.61900% 0.47938% 0.53634% 0.52542% 0.20284% 0.59437% 0.95620% 0.81486% 0.13977% 0.40635% 0.68949% 0.48554% 0.49179% 0.47096% 0.56853% 0.58563% 0.24228% 0.23222%

Transition Count

  A C D E F G H I K L M N P Q R S T V W Y
A 1090340844 14928316 45745410 66363749 46834369 77687385 13986358 43019618 89056909 71767877 19500363 29438232 25549221 90907152 45661915 116575378 113806905 44724898 15159949 15190300
C 14928316 6870158 2811399 4037950 9303784 5615216 17350508 22552369 11125181 44764411 2626806 5789265 2886860 10666494 7885874 55306352 13356546 11862565 6465952 27840199
D 45745410 2811399 > 2 Billion 233672971 54756167 37398945 51260256 16766130 124608585 30539080 5926154 124054398 67687335 36311570 46433686 68658230 44226054 18785219 8526746 18420051
E 66363749 4037950 233672971 1633904383n 17794106 101673447 19161490 37912412 228460181 41697748 11603473 37626088 56078659 156386830 73898924 50108091 54026228 32415539 27106370 28200080
F 46834369 9303784 54756167 17794106 2038806710n 24097517 43832974 91204198 25962071 199663018 13955621 31789758 9721363 31841580 21101512 40426907 30757232 110466849 36247979 168759201
G 77687385 5615216 37398945 101673447 24097517 2042792086n 7072987 38744924 95451861 52898326 4048932 61575055 41733763 39241408 62107329 92048699 79752642 35540757 10717370 29625466
H 13986358 17350508 51260256 19161490 43832974 7072987 706129786 13266688 37998535 57500542 2378214 28980099 16903043 40158182 17586347 38033231 32158216 9383315 18318062 45962075
I 43019618 22552369 16766130 37912412 91204198 38744924 13266688 2060267673n 68436948 270934875 73871707 11520628 29449566 36306762 51840022 45074576 170347886 452779770 7055299 34796854
K 89056909 11125181 124608585 228460181 25962071 95451861 37998535 68436948 > 2 Billion 80895013 27684124 140687880 121207681 169771726 375156595 101297917 89651013 50066560 20300097 43006827
L 71767877 44764411 30539080 41697748 199663018 52898326 57500542 270934875 80895013 > 2 Billion 81117470 32025288 69836240 45572080 80797064 73794947 124394700 209226675 104265737 67226642
M 19500363 2626806 5926154 11603473 13955621 4048932 2378214 73871707 27684124 81117470 430640680 2402388 6765707 32824367 16302130 9088285 31088264 109721536 4665642 8657597
N 29438232 5789265 124054398 37626088 31789758 61575055 28980099 11520628 140687880 32025288 2402388 1522121230n 58235914 39481831 26336229 64561901 75413716 19777989 6423540 13098310
P 25549221 2886860 67687335 56078659 9721363 41733763 16903043 29449566 121207681 69836240 6765707 58235914 > 2 Billion 23626721 66795465 71333305 23087546 58691468 17299025 14562623
Q 90907152 10666494 36311570 156386830 31841580 39241408 40158182 36306762 169771726 45572080 32824367 39481831 23626721 1811378813n 60555624 71842327 44572383 36522662 5113502 9952627
R 45661915 7885874 46433686 73898924 21101512 62107329 17586347 51840022 375156595 80797064 16302130 26336229 66795465 60555624 1765180535n 69386273 57053696 33558542 9699268 11135653
S 116575378 55306352 68658230 50108091 40426907 92048699 38033231 45074576 101297917 73794947 9088285 64561901 71333305 71842327 69386273 1629140711n 122466912 44042584 48041544 25789304
T 113806905 13356546 44226054 54026228 30757232 79752642 32158216 170347886 89651013 124394700 31088264 75413716 23087546 44572383 57053696 122466912 2068391030n 60033439 9464211 78996226
V 44724898 11862565 18785219 32415539 110466849 35540757 9383315 452779770 50066560 209226675 109721536 19777989 58691468 36522662 33558542 44042584 60033439 2061248833n 32221118 61257720
W 15159949 6465952 8526746 27106370 36247979 10717370 18318062 7055299 20300097 104265737 4665642 6423540 17299025 5113502 9699268 48041544 9464211 32221118 929972327 50568179
Y 15190300 27840199 18420051 28200080 168759201 29625466 45962075 34796854 43006827 67226642 8657597 13098310 14562623 9952627 11135653 25789304 78996226 61257720 50568179 1825637229n

Number of Amino Acids in Alignment

  A C D E F G H I K L M N P Q R S T V W Y
A 142179 - - - - - - - - - - - - - - - - - - -
C - 14321 - - - - - - - - - - - - - - - - - -
D - - 257596 - - - - - - - - - - - - - - - - -
E - - - 214218 - - - - - - - - - - - - - - - -
F - - - - 227283 - - - - - - - - - - - - - - -
G - - - - - 225807 - - - - - - - - - - - - - -
H - - - - - - 90061 - - - - - - - - - - - - -
I - - - - - - - 253076 - - - - - - - - - - - -
K - - - - - - - - 402702 - - - - - - - - - - -
L - - - - - - - - - 353658 - - - - - - - - - -
M - - - - - - - - - - 63490 - - - - - - - - -
N - - - - - - - - - - - 177021 - - - - - - - -
P - - - - - - - - - - - - 298327 - - - - - - -
Q - - - - - - - - - - - - - 206981 - - - - - -
R - - - - - - - - - - - - - - 208097 - - - - -
S - - - - - - - - - - - - - - - 203273 - - - -
T - - - - - - - - - - - - - - - - 241460 - - -
V - - - - - - - - - - - - - - - - - 246623 - -
W - - - - - - - - - - - - - - - - - - 104529 -
Y - - - - - - - - - - - - - - - - - - - 198532

Percentage of Amino Acids in Alignment

  A C D E F G H I K L M N P Q R S T V W Y
A 3.44% - - - - - - - - - - - - - - - - - - -
C - 0.34% - - - - - - - - - - - - - - - - - -
D - - 6.23% - - - - - - - - - - - - - - - - -
E - - - 5.18% - - - - - - - - - - - - - - - -
F - - - - 5.50% - - - - - - - - - - - - - - -
G - - - - - 5.46% - - - - - - - - - - - - - -
H - - - - - - 2.18% - - - - - - - - - - - - -
I - - - - - - - 6.12% - - - - - - - - - - - -
K - - - - - - - - 9.75% - - - - - - - - - - -
L - - - - - - - - - 8.56% - - - - - - - - - -
M - - - - - - - - - - 1.53% - - - - - - - - -
N - - - - - - - - - - - 4.28% - - - - - - - -
P - - - - - - - - - - - - 7.22% - - - - - - -
Q - - - - - - - - - - - - - 5.01% - - - - - -
R - - - - - - - - - - - - - - 5.03% - - - - -
S - - - - - - - - - - - - - - - 4.92% - - - -
T - - - - - - - - - - - - - - - - 5.84% - - -
V - - - - - - - - - - - - - - - - - 5.97% - -
W - - - - - - - - - - - - - - - - - - 2.53% -
Y - - - - - - - - - - - - - - - - - - - 4.80%