Blosum Log2 No Clustering

  A C D E F G H I K L M N P Q R S T V W Y
A 6 0 -8 -6 -12 -5 -15 -8 -9 -12 -5 -10 -5 -2 -8 1 -5 -3 -3 -15
C 0 10 -13 -16 -3 -5 -12 -7 -16 -5 1 -12 -8 -13 -9 1 -8 0 -6 -7
D -8 -13 8 0 -11 -7 -12 -11 -5 -7 -13 -1 -6 -6 -11 -4 -6 -10 -2 -10
E -6 -16 0 8 -11 -11 -11 -10 -4 -8 -13 -8 -5 -1 -9 -8 -6 -6 -17 -8
F -12 -3 -11 -11 9 -16 -5 -8 -11 -4 -11 -7 -13 -11 -13 -8 -12 -11 -7 3
G -5 -5 -7 -11 -16 6 -15 -17 -7 -15 -6 -10 -6 -13 -11 -8 -14 -7 -4 -17
H -15 -12 -12 -11 -5 -15 9 -3 -10 -12 -12 -1 -3 -2 -10 -6 -10 -9 -10 -5
I -8 -7 -11 -10 -8 -17 -3 7 -7 0 0 -2 -6 -2 -11 -9 -2 0 -14 -1
K -9 -16 -5 -4 -11 -7 -10 -7 8 -8 -12 -8 -9 -4 -1 -9 -9 -7 -18 -9
L -12 -5 -7 -8 -4 -15 -12 0 -8 6 1 -13 -10 -6 -5 -7 -3 -4 -10 -3
M -5 1 -13 -13 -11 -6 -12 0 -12 1 9 -11 -12 -4 -15 -8 -7 -4 -9 -4
N -10 -12 -1 -8 -7 -10 -1 -2 -8 -13 -11 9 -3 -8 -11 -6 -7 -12 -15 -3
P -5 -8 -6 -5 -13 -6 -3 -6 -9 -10 -12 -3 10 -10 -2 -2 -9 -6 -18 -14
Q -2 -13 -6 -1 -11 -13 -2 -2 -4 -6 -4 -8 -10 10 -4 -6 -2 -4 -15 -11
R -8 -9 -11 -9 -13 -11 -10 -11 -1 -5 -15 -11 -2 -4 7 -8 -9 -12 -11 -11
S 1 1 -4 -8 -8 -8 -6 -9 -9 -7 -8 -6 -2 -6 -8 9 -1 -3 -10 -9
T -5 -8 -6 -6 -12 -14 -10 -2 -9 -3 -7 -7 -9 -2 -9 -1 8 -2 -3 -11
V -3 0 -10 -6 -11 -7 -9 0 -7 -4 -4 -12 -6 -4 -12 -3 -2 7 -14 -4
W -3 -6 -2 -17 -7 -4 -10 -14 -18 -10 -9 -15 -18 -15 -11 -10 -3 -14 11 0
Y -15 -7 -10 -8 3 -17 -5 -1 -9 -3 -4 -3 -14 -11 -11 -9 -11 -4 0 9

Blosum LN No Clustering

  A C D E F G H I K L M N P Q R S T V W Y
A 4 0 -6 -4 -9 -4 -10 -6 -6 -8 -3 -7 -3 -1 -6 0 -3 -2 -2 -10
C 0 7 -9 -11 -2 -3 -9 -5 -11 -3 0 -8 -5 -9 -6 1 -5 0 -4 -5
D -6 -9 5 0 -8 -5 -8 -8 -4 -5 -9 -1 -4 -4 -8 -3 -4 -7 -2 -7
E -4 -11 0 5 -8 -7 -8 -7 -3 -6 -9 -5 -4 -1 -6 -5 -4 -4 -11 -5
F -9 -2 -8 -8 6 -11 -3 -6 -8 -3 -8 -5 -9 -8 -9 -6 -8 -7 -5 2
G -4 -3 -5 -7 -11 4 -11 -12 -5 -10 -4 -7 -4 -9 -8 -6 -10 -5 -3 -12
H -10 -9 -8 -8 -3 -11 6 -2 -7 -8 -8 -1 -2 -1 -7 -4 -7 -7 -7 -3
I -6 -5 -8 -7 -6 -12 -2 5 -5 0 0 -1 -4 -1 -8 -6 -2 0 -9 -1
K -6 -11 -4 -3 -8 -5 -7 -5 6 -5 -8 -5 -6 -3 -1 -7 -6 -5 -12 -6
L -8 -3 -5 -6 -3 -10 -8 0 -5 4 1 -9 -7 -4 -4 -5 -2 -3 -7 -2
M -3 0 -9 -9 -8 -4 -8 0 -8 1 6 -8 -8 -2 -10 -6 -5 -3 -6 -3
N -7 -8 -1 -5 -5 -7 -1 -1 -5 -9 -8 6 -2 -6 -8 -4 -5 -8 -10 -2
P -3 -5 -4 -4 -9 -4 -2 -4 -6 -7 -8 -2 7 -7 -2 -1 -6 -4 -12 -10
Q -1 -9 -4 -1 -8 -9 -1 -1 -3 -4 -2 -6 -7 7 -3 -4 -2 -3 -10 -8
R -6 -6 -8 -6 -9 -8 -7 -8 -1 -4 -10 -8 -2 -3 5 -5 -7 -8 -8 -8
S 0 1 -3 -5 -6 -6 -4 -6 -7 -5 -6 -4 -1 -4 -5 6 -1 -2 -7 -6
T -3 -5 -4 -4 -8 -10 -7 -2 -6 -2 -5 -5 -6 -2 -7 -1 6 -2 -2 -7
V -2 0 -7 -4 -7 -5 -7 0 -5 -3 -3 -8 -4 -3 -8 -2 -2 5 -10 -3
W -2 -4 -2 -11 -5 -3 -7 -9 -12 -7 -6 -10 -12 -10 -8 -7 -2 -10 8 0
Y -10 -5 -7 -5 2 -12 -3 -1 -6 -2 -3 -2 -10 -8 -8 -6 -7 -3 0 6

Blosum Log10 No Clustering

  A C D E F G H I K L M N P Q R S T V W Y
A 2 0 -2 -2 -4 -2 -4 -2 -3 -4 -1 -3 -1 -1 -3 0 -1 -1 -1 -5
C 0 3 -4 -5 -1 -1 -4 -2 -5 -1 0 -3 -2 -4 -3 0 -2 0 -2 -2
D -2 -4 2 0 -3 -2 -3 -3 -2 -2 -4 0 -2 -2 -3 -1 -2 -3 -1 -3
E -2 -5 0 2 -3 -3 -3 -3 -1 -2 -4 -2 -2 0 -3 -2 -2 -2 -5 -2
F -4 -1 -3 -3 3 -5 -1 -2 -3 -1 -3 -2 -4 -3 -4 -2 -4 -3 -2 1
G -2 -1 -2 -3 -5 2 -5 -5 -2 -5 -2 -3 -2 -4 -3 -3 -4 -2 -1 -5
H -4 -4 -3 -3 -1 -5 3 -1 -3 -4 -4 0 -1 -1 -3 -2 -3 -3 -3 -1
I -2 -2 -3 -3 -2 -5 -1 2 -2 0 0 0 -2 -1 -3 -3 -1 0 -4 0
K -3 -5 -2 -1 -3 -2 -3 -2 3 -2 -3 -2 -3 -1 0 -3 -3 -2 -5 -3
L -4 -1 -2 -2 -1 -5 -4 0 -2 2 0 -4 -3 -2 -2 -2 -1 -1 -3 -1
M -1 0 -4 -4 -3 -2 -4 0 -3 0 3 -3 -4 -1 -4 -2 -2 -1 -3 -1
N -3 -3 0 -2 -2 -3 0 0 -2 -4 -3 3 -1 -2 -3 -2 -2 -4 -4 -1
P -1 -2 -2 -2 -4 -2 -1 -2 -3 -3 -4 -1 3 -3 -1 -1 -3 -2 -5 -4
Q -1 -4 -2 0 -3 -4 -1 -1 -1 -2 -1 -2 -3 3 -1 -2 -1 -1 -5 -3
R -3 -3 -3 -3 -4 -3 -3 -3 0 -2 -4 -3 -1 -1 2 -2 -3 -4 -3 -3
S 0 0 -1 -2 -2 -3 -2 -3 -3 -2 -2 -2 -1 -2 -2 3 0 -1 -3 -3
T -1 -2 -2 -2 -4 -4 -3 -1 -3 -1 -2 -2 -3 -1 -3 0 3 -1 -1 -3
V -1 0 -3 -2 -3 -2 -3 0 -2 -1 -1 -4 -2 -1 -4 -1 -1 2 -4 -1
W -1 -2 -1 -5 -2 -1 -3 -4 -5 -3 -3 -4 -5 -5 -3 -3 -1 -4 3 0
Y -5 -2 -3 -2 1 -5 -1 0 -3 -1 -1 -1 -4 -3 -3 -3 -3 -1 0 3

Distance Log2

  A C D E F G H I K L M N P Q R S T V W Y
A 3 7 10 8 12 7 13 10 11 11 9 11 9 8 9 6 8 7 9 14
C 7 5 14 16 10 9 14 11 16 9 8 14 13 15 12 8 12 7 13 12
D 10 14 3 6 12 9 13 12 9 9 14 7 10 11 11 9 9 11 9 12
E 8 16 6 3 12 11 12 11 8 10 14 11 10 8 10 11 10 9 16 11
F 12 10 12 12 4 14 10 11 13 8 13 11 14 14 13 12 13 12 12 6
G 7 9 9 11 14 2 13 14 9 12 9 11 9 13 11 10 13 9 9 15
H 13 14 13 12 10 13 4 8 12 12 14 8 9 9 11 10 12 11 14 10
I 10 11 12 11 11 14 8 4 10 6 7 8 10 9 12 11 8 6 15 8
K 11 16 9 8 13 9 12 10 4 10 13 11 12 10 7 12 11 10 17 12
L 11 9 9 10 8 12 12 6 10 3 6 12 11 10 8 10 8 7 12 8
M 9 8 14 14 13 9 14 7 13 6 5 13 14 10 14 12 11 9 13 10
N 11 14 7 11 11 11 8 8 11 12 13 4 9 12 12 11 11 13 16 9
P 9 13 10 10 14 9 9 10 12 11 14 9 4 14 8 9 12 10 18 15
Q 8 15 11 8 14 13 9 9 10 10 10 12 14 5 9 11 9 9 17 14
R 9 12 11 10 13 11 11 12 7 8 14 12 8 9 3 10 11 12 13 13
S 6 8 9 11 12 10 10 11 12 10 12 11 9 11 10 4 8 8 14 12
T 8 12 9 10 13 13 12 8 11 8 11 11 12 9 11 8 4 8 10 13
V 7 7 11 9 12 9 11 6 10 7 9 13 10 9 12 8 8 3 15 9
W 9 13 9 16 12 9 14 15 17 12 13 16 18 17 13 14 10 15 5 9
Y 14 12 12 11 6 15 10 8 12 8 10 9 15 14 13 12 13 9 9 5

Distance LN

  A C D E F G H I K L M N P Q R S T V W Y
A 2 5 6 6 8 5 9 7 7 7 6 7 6 5 6 4 6 4 6 10
C 5 3 10 11 7 6 10 8 11 6 6 9 8 10 8 5 8 5 9 8
D 6 10 2 4 8 6 8 8 6 6 9 5 7 7 8 6 6 7 6 8
E 6 11 4 2 8 7 8 8 5 6 9 7 6 5 7 7 6 6 11 7
F 8 7 8 8 2 9 6 7 8 5 9 7 9 9 9 8 9 8 8 4
G 5 6 6 7 9 1 9 9 6 8 6 7 6 9 7 7 8 6 6 10
H 9 10 8 8 6 9 2 6 8 8 9 5 6 6 7 7 8 7 9 7
I 7 8 8 8 7 9 6 2 7 4 5 5 7 6 8 8 5 4 10 5
K 7 11 6 5 8 6 8 7 2 6 9 7 8 6 4 8 7 7 12 8
L 7 6 6 6 5 8 8 4 6 2 4 8 8 7 5 7 5 5 8 5
M 6 6 9 9 9 6 9 5 9 4 3 9 10 7 10 8 8 6 9 7
N 7 9 5 7 7 7 5 5 7 8 9 2 6 8 8 7 7 8 11 6
P 6 8 7 6 9 6 6 7 8 8 10 6 3 9 5 6 8 6 12 10
Q 5 10 7 5 9 9 6 6 6 7 7 8 9 3 6 7 6 6 11 9
R 6 8 8 7 9 7 7 8 4 5 10 8 5 6 2 7 7 8 9 8
S 4 5 6 7 8 7 7 8 8 7 8 7 6 7 7 3 5 5 9 8
T 6 8 6 6 9 8 8 5 7 5 8 7 8 6 7 5 2 5 7 9
V 4 5 7 6 8 6 7 4 7 5 6 8 6 6 8 5 5 2 10 6
W 6 9 6 11 8 6 9 10 12 8 9 11 12 11 9 9 7 10 3 6
Y 10 8 8 7 4 10 7 5 8 5 7 6 10 9 8 8 9 6 6 3

Distance Log10

  A C D E F G H I K L M N P Q R S T V W Y
A 0 2 2 2 3 1 3 2 2 3 2 3 2 2 2 1 2 1 2 4
C 2 1 4 4 2 2 4 3 4 2 2 4 3 4 3 2 3 2 3 3
D 2 4 0 1 3 2 3 3 2 2 3 2 2 2 3 2 2 3 2 3
E 2 4 1 0 3 2 3 3 2 2 3 3 2 2 2 3 2 2 4 3
F 3 2 3 3 0 3 2 3 3 2 3 3 4 3 3 3 3 3 3 1
G 1 2 2 2 3 0 3 3 2 3 2 3 2 3 2 2 3 2 2 4
H 3 4 3 3 2 3 0 2 3 3 3 2 2 2 3 2 3 3 3 2
I 2 3 3 3 3 3 2 0 2 1 1 2 2 2 3 3 2 1 4 2
K 2 4 2 2 3 2 3 2 0 2 3 3 3 2 1 3 3 2 4 3
L 3 2 2 2 2 3 3 1 2 0 1 3 3 2 2 2 2 1 3 2
M 2 2 3 3 3 2 3 1 3 1 1 3 4 2 4 3 3 2 3 2
N 3 4 2 3 3 3 2 2 3 3 3 0 2 3 3 3 2 3 4 2
P 2 3 2 2 4 2 2 2 3 3 4 2 1 3 2 2 3 2 5 4
Q 2 4 2 2 3 3 2 2 2 2 2 3 3 1 2 3 2 2 4 3
R 2 3 3 2 3 2 3 3 1 2 4 3 2 2 0 2 3 3 3 3
S 1 2 2 3 3 2 2 3 3 2 3 3 2 3 2 1 2 2 3 3
T 2 3 2 2 3 3 3 2 3 2 3 2 3 2 3 2 0 2 2 3
V 1 2 3 2 3 2 3 1 2 1 2 3 2 2 3 2 2 0 4 2
W 2 3 2 4 3 2 3 4 4 3 3 4 5 4 3 3 2 4 1 2
Y 4 3 3 3 1 4 2 2 3 2 2 2 4 3 3 3 3 2 2 1

Observed Probability of Transition

  A C D E F G H I K L M N P Q R S T V W Y
A 7.43929% 0.31444% 0.06193% 0.14914% 0.00994% 0.34076% 0.00444% 0.05517% 0.03354% 0.02552% 0.09445% 0.02383% 0.10491% 0.22938% 0.07188% 0.75114% 0.14525% 0.48547% 0.08574% 0.00275%
C 0.31444% 1.38119% 0.00223% 0.00085% 0.05125% 0.08922% 0.00227% 0.01910% 0.00074% 0.07084% 0.14386% 0.00282% 0.00851% 0.00130% 0.01413% 0.18897% 0.01294% 0.28750% 0.00739% 0.00878%
D 0.06193% 0.00223% 4.82021% 0.73780% 0.00932% 0.09953% 0.00852% 0.01219% 0.08950% 0.08092% 0.00373% 0.30729% 0.03927% 0.03259% 0.01868% 0.10523% 0.07649% 0.02453% 0.07839% 0.01003%
E 0.14914% 0.00085% 0.73780% 5.14187% 0.00932% 0.03438% 0.01165% 0.01919% 0.15095% 0.06682% 0.00358% 0.03018% 0.06285% 0.18601% 0.03914% 0.02762% 0.06555% 0.09033% 0.00062% 0.02526%
F 0.00994% 0.05125% 0.00932% 0.00932% 3.44673% 0.00318% 0.06114% 0.02383% 0.00838% 0.21329% 0.00513% 0.02538% 0.00314% 0.00404% 0.00565% 0.01656% 0.00646% 0.01340% 0.01084% 0.69923%
G 0.34076% 0.08922% 0.09953% 0.03438% 0.00318% 10.6402% 0.00475% 0.00317% 0.09080% 0.01114% 0.09357% 0.02418% 0.07624% 0.00688% 0.03428% 0.03963% 0.00798% 0.11278% 0.08771% 0.00163%
H 0.00444% 0.00227% 0.00852% 0.01165% 0.06114% 0.00475% 3.76316% 0.13955% 0.01446% 0.01141% 0.00382% 0.20673% 0.08393% 0.10483% 0.02092% 0.03731% 0.01129% 0.02084% 0.00389% 0.04657%
I 0.05517% 0.01910% 0.01219% 0.01919% 0.02383% 0.00317% 0.13955% 3.51753% 0.04817% 0.90895% 0.35774% 0.22843% 0.04103% 0.12661% 0.01574% 0.01729% 0.21552% 0.77017% 0.00150% 0.22023%
K 0.03354% 0.00074% 0.08950% 0.15095% 0.00838% 0.09080% 0.01446% 0.04817% 4.09173% 0.06532% 0.00505% 0.02528% 0.01527% 0.06393% 0.50187% 0.01174% 0.02123% 0.04891% 0.00032% 0.01068%
L 0.02552% 0.07084% 0.08092% 0.06682% 0.21329% 0.01114% 0.01141% 0.90895% 0.06532% 7.72185% 0.72067% 0.00876% 0.02017% 0.05381% 0.22880% 0.05290% 0.27409% 0.32542% 0.01018% 0.17676%
M 0.09445% 0.14386% 0.00373% 0.00358% 0.00513% 0.09357% 0.00382% 0.35774% 0.00505% 0.72067% 2.11400% 0.00507% 0.00262% 0.04461% 0.00247% 0.01237% 0.01988% 0.08342% 0.00463% 0.04214%
N 0.02383% 0.00282% 0.30729% 0.03018% 0.02538% 0.02418% 0.20673% 0.22843% 0.02528% 0.00876% 0.00507% 3.35608% 0.08028% 0.01169% 0.01235% 0.02757% 0.03382% 0.00809% 0.00073% 0.09300%
P 0.10491% 0.00851% 0.03927% 0.06285% 0.00314% 0.07624% 0.08393% 0.04103% 0.01527% 0.02017% 0.00262% 0.08028% 2.65561% 0.00426% 0.19551% 0.09793% 0.01421% 0.06048% 0.00020% 0.00119%
Q 0.22938% 0.00130% 0.03259% 0.18601% 0.00404% 0.00688% 0.10483% 0.12661% 0.06393% 0.05381% 0.04461% 0.01169% 0.00426% 1.98329% 0.09272% 0.02135% 0.10278% 0.07387% 0.00045% 0.00333%
R 0.07188% 0.01413% 0.01868% 0.03914% 0.00565% 0.03428% 0.02092% 0.01574% 0.50187% 0.22880% 0.00247% 0.01235% 0.19551% 0.09272% 6.61155% 0.03556% 0.02562% 0.01678% 0.00458% 0.00806%
S 0.75114% 0.18897% 0.10523% 0.02762% 0.01656% 0.03963% 0.03731% 0.01729% 0.01174% 0.05290% 0.01237% 0.02757% 0.09793% 0.02135% 0.03556% 2.40767% 0.19147% 0.16557% 0.00348% 0.00953%
T 0.14525% 0.01294% 0.07649% 0.06555% 0.00646% 0.00798% 0.01129% 0.21552% 0.02123% 0.27409% 0.01988% 0.03382% 0.01421% 0.10278% 0.02562% 0.19147% 3.76992% 0.27554% 0.05259% 0.00624%
V 0.48547% 0.28750% 0.02453% 0.09033% 0.01340% 0.11278% 0.02084% 0.77017% 0.04891% 0.32542% 0.08342% 0.00809% 0.06048% 0.07387% 0.01678% 0.16557% 0.27554% 5.07771% 0.00139% 0.09605%
W 0.08574% 0.00739% 0.07839% 0.00062% 0.01084% 0.08771% 0.00389% 0.00150% 0.00032% 0.01018% 0.00463% 0.00073% 0.00020% 0.00045% 0.00458% 0.00348% 0.05259% 0.00139% 1.36680% 0.10414%
Y 0.00275% 0.00878% 0.01003% 0.02526% 0.69923% 0.00163% 0.04657% 0.22023% 0.01068% 0.17676% 0.04214% 0.09300% 0.00119% 0.00333% 0.00806% 0.00953% 0.00624% 0.09605% 0.10414% 2.09074%

Expected Probability of Transition

  A C D E F G H I K L M N P Q R S T V W Y
A 0.79819% 0.35643% 1.02195% 1.07165% 0.72125% 2.00504% 0.74374% 0.91653% 0.83889% 1.67690% 0.52505% 0.70291% 0.55600% 0.45842% 1.30152% 0.59221% 0.81291% 1.17181% 0.28521% 0.51346%
C 0.35643% 0.03979% 0.22817% 0.23927% 0.16104% 0.44768% 0.16606% 0.20464% 0.18730% 0.37441% 0.11723% 0.15694% 0.12414% 0.10235% 0.29060% 0.13222% 0.18150% 0.26163% 0.06368% 0.11464%
D 1.02195% 0.22817% 0.32710% 0.68603% 0.46172% 1.28355% 0.47611% 0.58673% 0.53702% 1.07349% 0.33612% 0.44998% 0.35593% 0.29346% 0.83319% 0.37911% 0.52039% 0.75015% 0.18258% 0.32870%
E 1.07165% 0.23927% 0.68603% 0.35970% 0.48418% 1.34599% 0.49927% 0.61527% 0.56315% 1.12571% 0.35246% 0.47186% 0.37324% 0.30774% 0.87371% 0.39755% 0.54571% 0.78664% 0.19146% 0.34468%
F 0.72125% 0.16104% 0.46172% 0.48418% 0.16293% 0.90589% 0.33602% 0.41409% 0.37901% 0.75763% 0.23722% 0.31758% 0.25120% 0.20711% 0.58803% 0.26756% 0.36727% 0.52943% 0.12886% 0.23198%
G 2.00504% 0.44768% 1.28355% 1.34599% 0.90589% 1.25915% 0.93413% 1.15115% 1.05363% 2.10617% 0.65945% 0.88285% 0.69833% 0.57577% 1.63469% 0.74381% 1.02100% 1.47178% 0.35822% 0.64490%
H 0.74374% 0.16606% 0.47611% 0.49927% 0.33602% 0.93413% 0.17325% 0.42700% 0.39083% 0.78125% 0.24461% 0.32748% 0.25903% 0.21357% 0.60636% 0.27590% 0.37872% 0.54593% 0.13288% 0.23921%
I 0.91653% 0.20464% 0.58673% 0.61527% 0.41409% 1.15115% 0.42700% 0.26310% 0.48163% 0.96275% 0.30144% 0.40356% 0.31921% 0.26319% 0.74724% 0.34000% 0.46671% 0.67277% 0.16375% 0.29479%
K 0.83889% 0.18730% 0.53702% 0.56315% 0.37901% 1.05363% 0.39083% 0.48163% 0.22041% 0.88120% 0.27591% 0.36937% 0.29217% 0.24089% 0.68394% 0.31120% 0.42718% 0.61577% 0.14988% 0.26982%
L 1.67690% 0.37441% 1.07349% 1.12571% 0.75763% 2.10617% 0.78125% 0.96275% 0.88120% 0.88074% 0.55153% 0.73836% 0.58404% 0.48154% 1.36716% 0.62208% 0.85391% 1.23091% 0.29960% 0.53935%
M 0.52505% 0.11723% 0.33612% 0.35246% 0.23722% 0.65945% 0.24461% 0.30144% 0.27591% 0.55153% 0.08634% 0.23118% 0.18286% 0.15077% 0.42807% 0.19477% 0.26736% 0.38540% 0.09380% 0.16887%
N 0.70291% 0.15694% 0.44998% 0.47186% 0.31758% 0.88285% 0.32748% 0.40356% 0.36937% 0.73836% 0.23118% 0.15475% 0.24481% 0.20185% 0.57308% 0.26076% 0.35793% 0.51596% 0.12558% 0.22608%
P 0.55600% 0.12414% 0.35593% 0.37324% 0.25120% 0.69833% 0.25903% 0.31921% 0.29217% 0.58404% 0.18286% 0.24481% 0.09682% 0.15966% 0.45330% 0.20626% 0.28312% 0.40812% 0.09933% 0.17883%
Q 0.45842% 0.10235% 0.29346% 0.30774% 0.20711% 0.57577% 0.21357% 0.26319% 0.24089% 0.48154% 0.15077% 0.20185% 0.15966% 0.06582% 0.37374% 0.17006% 0.23343% 0.33650% 0.08190% 0.14744%
R 1.30152% 0.29060% 0.83319% 0.87371% 0.58803% 1.63469% 0.60636% 0.74724% 0.68394% 1.36716% 0.42807% 0.57308% 0.45330% 0.37374% 0.53056% 0.48282% 0.66276% 0.95536% 0.23253% 0.41862%
S 0.59221% 0.13222% 0.37911% 0.39755% 0.26756% 0.74381% 0.27590% 0.34000% 0.31120% 0.62208% 0.19477% 0.26076% 0.20626% 0.17006% 0.48282% 0.10984% 0.30156% 0.43470% 0.10580% 0.19048%
T 0.81291% 0.18150% 0.52039% 0.54571% 0.36727% 1.02100% 0.37872% 0.46671% 0.42718% 0.85391% 0.26736% 0.35793% 0.28312% 0.23343% 0.66276% 0.30156% 0.20697% 0.59670% 0.14523% 0.26146%
V 1.17181% 0.26163% 0.75015% 0.78664% 0.52943% 1.47178% 0.54593% 0.67277% 0.61577% 1.23091% 0.38540% 0.51596% 0.40812% 0.33650% 0.95536% 0.43470% 0.59670% 0.43007% 0.20936% 0.37690%
W 0.28521% 0.06368% 0.18258% 0.19146% 0.12886% 0.35822% 0.13288% 0.16375% 0.14988% 0.29960% 0.09380% 0.12558% 0.09933% 0.08190% 0.23253% 0.10580% 0.14523% 0.20936% 0.02547% 0.09173%
Y 0.51346% 0.11464% 0.32870% 0.34468% 0.23198% 0.64490% 0.23921% 0.29479% 0.26982% 0.53935% 0.16887% 0.22608% 0.17883% 0.14744% 0.41862% 0.19048% 0.26146% 0.37690% 0.09173% 0.08257%

Transition Count

  A C D E F G H I K L M N P Q R S T V W Y
A 1050538391 44404167 8745815 21061027 1403695 48121221 627051 7791475 4736920 3603769 13338112 3365876 14815246 32392335 10151220 106072915 20512415 68555599 12108078 388458
C 44404167 195045783 315361 120839 7237875 12599322 321298 2697626 105128 10004087 20315529 398786 1201867 183961 1996502 26685385 1827828 40599231 1043789 1240400
D 8745815 315361 680686411 104188842 1316252 14056443 1203871 1721586 12639659 11428397 527367 43393847 5546394 4602335 2638996 14859975 10802089 3465132 11069832 1417517
E 21061027 120839 104188842 726108341 1317024 4855437 1645271 2710824 21316933 9436801 506117 4262139 8876434 26268397 5527732 3901599 9257432 12757064 87742 3567185
F 1403695 7237875 1316252 1317024 486729449 449145 8634515 3365568 1184354 30120459 724898 3584474 444412 571449 799179 2339196 913370 1892767 1531407 98741825
G 48121221 12599322 14056443 4855437 449145 1502563238 671749 447798 12823189 1573971 13214656 3414664 10767403 971788 4842034 5596466 1126895 15926718 12386040 230385
H 627051 321298 1203871 1645271 8634515 671749 531414408 19707484 2043049 1612011 539777 29193521 11852306 14803518 2954755 5269397 1595150 2943082 550411 6576417
I 7791475 2697626 1721586 2710824 3365568 447798 19707484 496727617 6803474 128357296 50518985 32258562 5794274 17880329 2223393 2442564 30434584 108760470 211964 31100759
K 4736920 105128 12639659 21316933 1184354 12823189 2043049 6803474 577813787 9224402 713819 3570981 2157004 9028747 70871544 1659040 2998584 6907197 45129 1508551
L 3603769 10004087 11428397 9436801 30120459 1573971 1612011 128357296 9224402 1090440180 101770047 1238070 2848500 7599959 32310376 7471117 38706566 45955463 1437682 24962464
M 13338112 20315529 527367 506117 724898 13214656 539777 50518985 713819 101770047 298528108 716441 370730 6299782 349155 1748112 2807492 11781361 653955 5951256
N 3365876 398786 43393847 4262139 3584474 3414664 29193521 32258562 3570981 1238070 716441 473928460 11336715 1651820 1744974 3893677 4776676 1143322 103980 13133529
P 14815246 1201867 5546394 8876434 444412 10767403 11852306 5794274 2157004 2848500 370730 11336715 375012344 602645 27609263 13829267 2007397 8541748 28187 169051
Q 32392335 183961 4602335 26268397 571449 971788 14803518 17880329 9028747 7599959 6299782 1651820 602645 280070272 13093793 3016186 14515277 10431512 64020 471239
R 10151220 1996502 2638996 5527732 799179 4842034 2954755 2223393 70871544 32310376 349155 1744974 27609263 13093793 933649219 5021628 3618428 2369575 647773 1138489
S 106072915 26685385 14859975 3901599 2339196 5596466 5269397 2442564 1659040 7471117 1748112 3893677 13829267 3016186 5021628 339999278 27039497 23381626 492171 1346083
T 20512415 1827828 10802089 9257432 913370 1126895 1595150 30434584 2998584 38706566 2807492 4776676 2007397 14515277 3618428 27039497 532369728 38911123 7427680 881971
V 68555599 40599231 3465132 12757064 1892767 15926718 2943082 108760470 6907197 45955463 11781361 1143322 8541748 10431512 2369575 23381626 38911123 717048530 197516 13564306
W 12108078 1043789 11069832 87742 1531407 12386040 550411 211964 45129 1437682 653955 103980 28187 64020 647773 492171 7427680 197516 193012561 14706286
Y 388458 1240400 1417517 3567185 98741825 230385 6576417 31100759 1508551 24962464 5951256 13133529 169051 471239 1138489 1346083 881971 13564306 14706286 295243575

Number of Amino Acids in Alignment

  A C D E F G H I K L M N P Q R S T V W Y
A 268983 - - - - - - - - - - - - - - - - - - -
C - 60380 - - - - - - - - - - - - - - - - - -
D - - 166833 - - - - - - - - - - - - - - - - -
E - - - 180469 - - - - - - - - - - - - - - - -
F - - - - 116265 - - - - - - - - - - - - - - -
G - - - - - 330240 - - - - - - - - - - - - - -
H - - - - - - 120141 - - - - - - - - - - - - -
I - - - - - - - 150412 - - - - - - - - - - - -
K - - - - - - - - 136926 - - - - - - - - - - -
L - - - - - - - - - 275924 - - - - - - - - - -
M - - - - - - - - - - 84534 - - - - - - - - -
N - - - - - - - - - - - 116158 - - - - - - - -
P - - - - - - - - - - - - 93191 - - - - - - -
Q - - - - - - - - - - - - - 75548 - - - - - -
R - - - - - - - - - - - - - - 213543 - - - - -
S - - - - - - - - - - - - - - - 98134 - - - -
T - - - - - - - - - - - - - - - - 132081 - - -
V - - - - - - - - - - - - - - - - - 193048 - -
W - - - - - - - - - - - - - - - - - - 50340 -
Y - - - - - - - - - - - - - - - - - - - 82595

Percentage of Amino Acids in Alignment

  A C D E F G H I K L M N P Q R S T V W Y
A 9.13% - - - - - - - - - - - - - - - - - - -
C - 2.04% - - - - - - - - - - - - - - - - - -
D - - 5.66% - - - - - - - - - - - - - - - - -
E - - - 6.12% - - - - - - - - - - - - - - - -
F - - - - 3.94% - - - - - - - - - - - - - - -
G - - - - - 11.2% - - - - - - - - - - - - - -
H - - - - - - 4.07% - - - - - - - - - - - - -
I - - - - - - - 5.10% - - - - - - - - - - - -
K - - - - - - - - 4.64% - - - - - - - - - - -
L - - - - - - - - - 9.36% - - - - - - - - - -
M - - - - - - - - - - 2.86% - - - - - - - - -
N - - - - - - - - - - - 3.94% - - - - - - - -
P - - - - - - - - - - - - 3.16% - - - - - - -
Q - - - - - - - - - - - - - 2.56% - - - - - -
R - - - - - - - - - - - - - - 7.24% - - - - -
S - - - - - - - - - - - - - - - 3.33% - - - -
T - - - - - - - - - - - - - - - - 4.48% - - -
V - - - - - - - - - - - - - - - - - 6.55% - -
W - - - - - - - - - - - - - - - - - - 1.70% -
Y - - - - - - - - - - - - - - - - - - - 2.80%